Analysis of interatomic Contacts of Structural Units in PDB entry:
8PNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PNW entry

There is 1 chain in PDB entry 8PNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ALA 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8PNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed alpha
Helix 2
AA2
A
51 66Right-handed alpha
Helix 3
AA3
A
72 85Right-handed alpha
Helix 4
AA4
A
119 129Right-handed alpha
Helix 5
AA5
A
143 151Right-handed 310
Helix 6
AA6
A
159 172Right-handed alpha
Helix 7
AA7
A
206 210Right-handed 310
Helix 8
AA8
A
214 228Right-handed alpha
Helix 9
AA9
A
237 244Right-handed alpha
Helix 10
AB1
A
272 281Right-handed alpha
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There are 3 sheets in PDB entry 8PNW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
6 11anti-parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
93 100anti-parallel
Strand 5
A
37 44anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
130 136parallel
Strand 3
A
255 262parallel
Strand 4
A
246 251anti-parallel
Strand 5
A
193 198anti-parallel
Strand 6
A
201 204anti-parallel
Strand 7
A
231 233parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
130 136parallel
Strand 3
A
255 262parallel
Strand 4
A
265 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il