Analysis of interatomic Contacts of Structural Units in PDB entry:
8PO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PO2 entry

There are 3 chains in PDB entry 8PO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 705ASP 987
B
 ALA 702ASP 987
D
 MET 0PRO 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8PO2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
755 767Right-handed alpha
Helix 2
AA2
A
768 771Right-handed 310
Helix 3
AA3
A
800 808Right-handed alpha
Helix 4
AA4
A
809 812Right-handed 310
Helix 5
AA5
A
813 834Right-handed alpha
Helix 6
AA6
A
842 844Right-handed 310
Helix 7
AA7
A
860 865Right-handed alpha
Helix 8
AA8
A
880 884Right-handed 310
Helix 9
AA9
A
885 892Right-handed alpha
Helix 10
AB1
A
895 912Right-handed alpha
Helix 11
AB2
A
922 924Right-handed 310
Helix 12
AB3
A
925 932Right-handed alpha
Helix 13
AB4
A
943 954Right-handed alpha
Helix 14
AB5
A
957 961Right-handed 310
Helix 15
AB6
A
963 977Right-handed alpha
Helix 16
AB7
A
977 982Right-handed alpha
Helix 17
AB8
B
708 710Right-handed 310
Helix 18
AB9
B
755 767Right-handed alpha
Helix 19
AC1
B
768 771Right-handed 310
Helix 20
AC2
B
800 808Right-handed alpha
Helix 21
AC3
B
813 834Right-handed alpha
Helix 22
AC4
B
842 844Right-handed 310
Helix 23
AC5
B
860 865Right-handed alpha
Helix 24
AC6
B
880 884Right-handed 310
Helix 25
AC7
B
885 892Right-handed alpha
Helix 26
AC8
B
895 912Right-handed alpha
Helix 27
AC9
B
922 924Right-handed 310
Helix 28
AD1
B
925 932Right-handed alpha
Helix 29
AD2
B
943 954Right-handed alpha
Helix 30
AD3
B
957 961Right-handed 310
Helix 31
AD4
B
963 977Right-handed alpha
Helix 32
AD5
B
978 981Right-handed 310
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There are 4 sheets in PDB entry 8PO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 720first strand
Strand 2
A
724 731anti-parallel
Strand 3
A
740 747anti-parallel
Strand 4
A
789 794anti-parallel
Strand 5
A
782 785anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
846 850first strand
Strand 2
A
853 856anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
705 706first strand
Strand 2
B
780 785parallel
Strand 3
B
789 794anti-parallel
Strand 4
B
740 747anti-parallel
Strand 5
B
724 731anti-parallel
Strand 6
B
712 720anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
846 850first strand
Strand 2
B
853 856anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il