Analysis of interatomic Contacts of Structural Units in PDB entry:
8PO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PO8 entry

There are 4 chains in PDB entry 8PO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4LEU 626
B
 LEU 7LEU 630
C
 C 1 C 11
D
 C 2 C 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8PO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
17 19Right-handed 310
Helix 3
AA3
A
20 35Right-handed alpha
Helix 4
AA4
A
39 67Right-handed alpha
Helix 5
AA5
A
77 82Right-handed alpha
Helix 6
AA6
A
82 93Right-handed alpha
Helix 7
AA7
A
105 118Right-handed alpha
Helix 8
AA8
A
131 146Right-handed alpha
Helix 9
AA9
A
175 181Right-handed alpha
Helix 10
AB1
A
182 185Right-handed 310
Helix 11
AB2
A
198 202Right-handed 310
Helix 12
AB3
A
203 217Right-handed alpha
Helix 13
AB4
A
218 220Right-handed 310
Helix 14
AB5
A
233 241Right-handed alpha
Helix 15
AB6
A
269 287Right-handed alpha
Helix 16
AB7
A
299 313Right-handed alpha
Helix 17
AB8
A
330 335Right-handed alpha
Helix 18
AB9
A
348 352Right-handed 310
Helix 19
AC1
A
389 399Right-handed alpha
Helix 20
AC2
A
413 420Right-handed alpha
Helix 21
AC3
A
426 430Right-handed 310
Helix 22
AC4
A
432 444Right-handed alpha
Helix 23
AC5
A
458 460Right-handed 310
Helix 24
AC6
A
461 472Right-handed alpha
Helix 25
AC7
A
487 495Right-handed alpha
Helix 26
AC8
A
499 512Right-handed alpha
Helix 27
AC9
A
514 526Right-handed alpha
Helix 28
AD1
A
553 572Right-handed alpha
Helix 29
AD2
A
573 583Right-handed alpha
Helix 30
AD3
A
587 608Right-handed alpha
Helix 31
AD4
A
622 626Right-handed 310
Helix 32
AD5
B
8 16Right-handed alpha
Helix 33
AD6
B
17 19Right-handed 310
Helix 34
AD7
B
21 35Right-handed alpha
Helix 35
AD8
B
45 68Right-handed alpha
Helix 36
AD9
B
77 82Right-handed alpha
Helix 37
AE1
B
82 93Right-handed alpha
Helix 38
AE2
B
105 117Right-handed alpha
Helix 39
AE3
B
131 146Right-handed alpha
Helix 40
AE4
B
175 182Right-handed alpha
Helix 41
AE5
B
198 202Right-handed 310
Helix 42
AE6
B
203 217Right-handed alpha
Helix 43
AE7
B
218 220Right-handed 310
Helix 44
AE8
B
234 241Right-handed alpha
Helix 45
AE9
B
275 287Right-handed alpha
Helix 46
AF1
B
299 314Right-handed alpha
Helix 47
AF2
B
328 335Right-handed alpha
Helix 48
AF3
B
349 354Right-handed alpha
Helix 49
AF4
B
389 399Right-handed alpha
Helix 50
AF5
B
413 420Right-handed alpha
Helix 51
AF6
B
426 430Right-handed 310
Helix 52
AF7
B
432 444Right-handed alpha
Helix 53
AF8
B
447 451Right-handed 310
Helix 54
AF9
B
458 460Right-handed 310
Helix 55
AG1
B
461 472Right-handed alpha
Helix 56
AG2
B
487 495Right-handed alpha
Helix 57
AG3
B
499 510Right-handed alpha
Helix 58
AG4
B
514 526Right-handed alpha
Helix 59
AG5
B
539 546Right-handed alpha
Helix 60
AG6
B
547 549Right-handed 310
Helix 61
AG7
B
553 572Right-handed alpha
Helix 62
AG8
B
573 584Right-handed alpha
Helix 63
AG9
B
587 608Right-handed alpha
Helix 64
AH1
B
620 627Right-handed alpha
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There are 10 sheets in PDB entry 8PO8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
154 158anti-parallel
Strand 3
A
170 174parallel
Strand 4
A
124 129parallel
Strand 5
A
191 196parallel
Strand 6
A
224 229parallel
Strand 7
A
95 99parallel
Strand 8
A
246 248parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
407 410parallel
Strand 3
A
360 365parallel
Strand 4
A
292 296parallel
Strand 5
A
342 347parallel
Strand 6
A
318 322parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
385 387anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
380 382anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 477first strand
Strand 2
A
484 486anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 163first strand
Strand 2
B
154 158anti-parallel
Strand 3
B
170 174parallel
Strand 4
B
124 129parallel
Strand 5
B
191 196parallel
Strand 6
B
224 229parallel
Strand 7
B
95 99parallel
Strand 8
B
246 248parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 260first strand
Strand 2
B
406 410parallel
Strand 3
B
360 365parallel
Strand 4
B
292 296parallel
Strand 5
B
342 347parallel
Strand 6
B
318 322parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
385 387anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 375first strand
Strand 2
B
380 382anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
475 476first strand
Strand 2
B
485 486anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il