Analysis of interatomic Contacts of Structural Units in PDB entry:
8POF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8POF entry

There is 1 chain in PDB entry 8POF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8POF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 27Right-handed 310
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
132 136Right-handed 310
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
A
241 248Right-handed alpha
Helix 7
AA7
A
253 261Right-handed alpha
Helix 8
AA8
A
279 284Right-handed alpha
Helix 9
AA9
A
285 288Right-handed 310
Helix 10
AB1
A
294 297Right-handed 310
Helix 11
AB2
A
298 306Right-handed alpha
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There are 6 sheets in PDB entry 8POF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
310 320anti-parallel
Strand 4
A
6 11parallel
Strand 5
A
14 22anti-parallel
Strand 6
A
67 72anti-parallel
Strand 7
A
264 272anti-parallel
Strand 8
A
102 109anti-parallel
Strand 9
A
139 145anti-parallel
Strand 10
A
150 155anti-parallel
Strand 11
A
171 173anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
264 272anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
14 22anti-parallel
Strand 5
A
6 11anti-parallel
Strand 6
A
310 320parallel
Strand 7
A
87 94anti-parallel
Strand 8
A
197 205anti-parallel
Strand 9
A
211 220anti-parallel
Strand 10
A
223 226anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
62 63anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
165 166anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
191 192parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
235 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il