Analysis of interatomic Contacts of Structural Units in PDB entry:
8POH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8POH entry

There are 10 chains in PDB entry 8POH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 202	ARG 716
B	MET 1	ARG 670
C	ASN 42	GLY 248
R	C 6	G 10
V	A 1	G 14
E	GLU 202	ARG 716
F	MET 1	ARG 670
G	ASN 42	LEU 125
S	C 6	G 10
U	A 1	G 14

There are100 helices in PDB entry 8POH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	208	216	Right-handed alpha
Helix 2	AA2	A	225	235	Right-handed alpha
Helix 3	AA3	A	241	249	Right-handed alpha
Helix 4	AA4	A	302	312	Right-handed alpha
Helix 5	AA5	A	330	348	Right-handed alpha
Helix 6	AA6	A	363	370	Right-handed alpha
Helix 7	AA7	A	405	415	Right-handed alpha
Helix 8	AA8	A	433	451	Right-handed alpha
Helix 9	AA9	A	453	476	Right-handed alpha
Helix 10	AB1	A	533	538	Right-handed 310
Helix 11	AB2	A	571	579	Right-handed alpha
Helix 12	AB3	A	582	604	Right-handed alpha
Helix 13	AB4	A	607	613	Right-handed alpha
Helix 14	AB5	A	632	650	Right-handed alpha
Helix 15	AB6	A	652	674	Right-handed alpha
Helix 16	AB7	A	682	692	Right-handed alpha
Helix 17	AB8	A	697	715	Right-handed alpha
Helix 18	AB9	B	5	11	Right-handed 310
Helix 19	AC1	B	13	22	Right-handed 310
Helix 20	AC2	B	35	49	Right-handed alpha
Helix 21	AC3	B	84	99	Right-handed alpha
Helix 22	AC4	B	101	117	Right-handed alpha
Helix 23	AC5	B	118	124	Right-handed 310
Helix 24	AC6	B	138	153	Right-handed alpha
Helix 25	AC7	B	162	176	Right-handed alpha
Helix 26	AC8	B	213	222	Right-handed alpha
Helix 27	AC9	B	248	265	Right-handed alpha
Helix 28	AD1	B	277	292	Right-handed alpha
Helix 29	AD2	B	314	326	Right-handed alpha
Helix 30	AD3	B	330	345	Right-handed alpha
Helix 31	AD4	B	371	374	Right-handed 310
Helix 32	AD5	B	382	393	Right-handed alpha
Helix 33	AD6	B	414	426	Right-handed alpha
Helix 34	AD7	B	428	433	Right-handed alpha
Helix 35	AD8	B	455	472	Right-handed alpha
Helix 36	AD9	B	518	536	Right-handed alpha
Helix 37	AE1	B	540	560	Right-handed alpha
Helix 38	AE2	B	572	583	Right-handed alpha
Helix 39	AE3	B	585	589	Right-handed 310
Helix 40	AE4	B	590	594	Right-handed 310
Helix 41	AE5	B	600	604	Right-handed 310
Helix 42	AE6	B	607	612	Right-handed alpha
Helix 43	AE7	B	613	616	Right-handed 310
Helix 44	AE8	B	617	625	Right-handed alpha
Helix 45	AE9	C	43	51	Right-handed alpha
Helix 46	AF1	C	62	67	Right-handed alpha
Helix 47	AF2	C	92	102	Right-handed alpha
Helix 48	AF3	C	109	115	Right-handed alpha
Helix 49	AF4	C	115	128	Right-handed alpha
Helix 50	AF5	C	228	230	Right-handed 310
Helix 51	AF6	C	231	236	Right-handed alpha
Helix 52	AF7	E	208	217	Right-handed alpha
Helix 53	AF8	E	225	235	Right-handed alpha
Helix 54	AF9	E	241	249	Right-handed alpha
Helix 55	AG1	E	302	312	Right-handed alpha
Helix 56	AG2	E	330	347	Right-handed alpha
Helix 57	AG3	E	363	370	Right-handed alpha
Helix 58	AG4	E	405	415	Right-handed alpha
Helix 59	AG5	E	433	451	Right-handed alpha
Helix 60	AG6	E	454	476	Right-handed alpha
Helix 61	AG7	E	533	538	Right-handed 310
Helix 62	AG8	E	572	579	Right-handed alpha
Helix 63	AG9	E	582	604	Right-handed alpha
Helix 64	AH1	E	607	612	Right-handed alpha
Helix 65	AH2	E	632	650	Right-handed alpha
Helix 66	AH3	E	652	674	Right-handed alpha
Helix 67	AH4	E	682	692	Right-handed alpha
Helix 68	AH5	E	697	715	Right-handed alpha
Helix 69	AH6	F	5	11	Right-handed 310
Helix 70	AH7	F	13	22	Right-handed 310
Helix 71	AH8	F	35	49	Right-handed alpha
Helix 72	AH9	F	84	99	Right-handed alpha
Helix 73	AI1	F	101	117	Right-handed alpha
Helix 74	AI2	F	118	124	Right-handed 310
Helix 75	AI3	F	138	153	Right-handed alpha
Helix 76	AI4	F	157	161	Right-handed 310
Helix 77	AI5	F	162	176	Right-handed alpha
Helix 78	AI6	F	213	222	Right-handed alpha
Helix 79	AI7	F	248	265	Right-handed alpha
Helix 80	AI8	F	276	292	Right-handed alpha
Helix 81	AI9	F	314	326	Right-handed alpha
Helix 82	AJ1	F	330	346	Right-handed alpha
Helix 83	AJ2	F	371	375	Right-handed 310
Helix 84	AJ3	F	382	393	Right-handed alpha
Helix 85	AJ4	F	414	426	Right-handed alpha
Helix 86	AJ5	F	428	433	Right-handed alpha
Helix 87	AJ6	F	455	472	Right-handed alpha
Helix 88	AJ7	F	518	537	Right-handed alpha
Helix 89	AJ8	F	540	560	Right-handed alpha
Helix 90	AJ9	F	572	583	Right-handed alpha
Helix 91	AK1	F	585	589	Right-handed 310
Helix 92	AK2	F	590	594	Right-handed 310
Helix 93	AK3	F	607	612	Right-handed alpha
Helix 94	AK4	F	613	616	Right-handed 310
Helix 95	AK5	F	617	625	Right-handed alpha
Helix 96	AK6	G	43	51	Right-handed alpha
Helix 97	AK7	G	62	67	Right-handed alpha
Helix 98	AK8	G	93	102	Right-handed alpha
Helix 99	AK9	G	110	115	Right-handed alpha
Helix 100	AL1	G	115	125	Right-handed alpha

There are 24 sheets in PDB entry 8POH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	304	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	437	443	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	496	506	anti-parallel
Strand 3	A	480	491	anti-parallel
Strand 4	A	359	360	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	541	552	anti-parallel
Strand 3	A	555	570	anti-parallel
Strand 4	A	518	526	anti-parallel
Strand 5	A	496	506	anti-parallel
Strand 6	A	480	491	anti-parallel
Strand 7	A	420	421	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	E	353	355	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	631	first strand
Strand 2	A	619	624	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	209	212	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	400	402	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	492	first strand
Strand 2	B	495	498	anti-parallel
Strand 3	B	501	504	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	89	91	anti-parallel
Strand 3	C	78	82	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	679	680	anti-parallel
Strand 3	F	483	486	anti-parallel
Strand 4	F	298	304	anti-parallel
Strand 5	F	446	453	anti-parallel
Strand 6	F	437	443	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	496	506	anti-parallel
Strand 3	E	517	526	anti-parallel
Strand 4	E	556	571	anti-parallel
Strand 5	E	541	551	anti-parallel
Strand 6	E	317	324	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	290	292	first strand
Strand 2	E	496	506	anti-parallel
Strand 3	E	482	490	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	378	first strand
Strand 2	F	364	369	parallel
Strand 3	F	354	359	anti-parallel
Strand 4	E	390	392	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	631	first strand
Strand 2	E	619	623	anti-parallel
Strand 3	F	2	3	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	57	first strand
Strand 2	F	64	67	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	130	first strand
Strand 2	F	135	137	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	182	first strand
Strand 2	F	209	212	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	239	243	first strand
Strand 2	F	223	229	anti-parallel
Strand 3	F	348	350	parallel
Strand 4	F	400	402	anti-parallel
Strand 5	F	396	397	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	489	492	first strand
Strand 2	F	495	498	anti-parallel
Strand 3	F	501	504	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	89	91	anti-parallel
Strand 3	G	78	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8POH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8POH