Analysis of interatomic Contacts of Structural Units in PDB entry:
8POK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8POK entry

There are 5 chains in PDB entry 8POK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19GLY 304
B
 LYS 8LEU 379
C
 SER 7ASN 345
D
 ASN 4GLU 63
E
 GLN 1SER 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8POK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 51Right-handed alpha
Helix 2
AA2
A
57 59Right-handed 310
Helix 3
AA3
A
60 68Right-handed alpha
Helix 4
AA4
A
70 77Right-handed alpha
Helix 5
AA5
A
77 87Right-handed alpha
Helix 6
AA6
A
93 128Right-handed alpha
Helix 7
AA7
A
131 136Right-handed alpha
Helix 8
AA8
A
137 161Right-handed alpha
Helix 9
AA9
A
187 193Right-handed alpha
Helix 10
AB1
A
197 216Right-handed alpha
Helix 11
AB2
A
216 224Right-handed alpha
Helix 12
AB3
A
237 266Right-handed alpha
Helix 13
AB4
A
275 296Right-handed alpha
Helix 14
AB5
B
9 39Right-handed alpha
Helix 15
AB6
B
219 224Right-handed 310
Helix 16
AB7
B
251 264Right-handed alpha
Helix 17
AB8
B
283 287Right-handed 310
Helix 18
AB9
B
298 302Right-handed 310
Helix 19
AC1
B
317 337Right-handed alpha
Helix 20
AC2
B
357 377Right-handed alpha
Helix 21
AC3
C
8 31Right-handed alpha
Helix 22
AC4
C
34 40Right-handed alpha
Helix 23
AC5
D
5 22Right-handed alpha
Helix 24
AC6
D
23 25Right-handed 310
Helix 25
AC7
D
29 44Right-handed alpha
Helix 26
AC8
E
28 32Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 8POK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
203 209anti-parallel
Strand 3
B
199 200anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
203 209anti-parallel
Strand 3
B
40 46parallel
Strand 4
B
229 233parallel
Strand 5
B
272 276parallel
Strand 6
B
345 346parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 56first strand
Strand 2
C
341 344anti-parallel
Strand 3
C
332 336anti-parallel
Strand 4
C
320 325anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 68first strand
Strand 2
C
74 79anti-parallel
Strand 3
C
83 88anti-parallel
Strand 4
C
93 99anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 108first strand
Strand 2
C
116 121anti-parallel
Strand 3
C
126 130anti-parallel
Strand 4
C
139 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 158first strand
Strand 2
C
161 166anti-parallel
Strand 3
C
170 175anti-parallel
Strand 4
C
181 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 197first strand
Strand 2
C
203 208anti-parallel
Strand 3
C
212 217anti-parallel
Strand 4
C
226 228anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
234 239first strand
Strand 2
C
245 250anti-parallel
Strand 3
C
254 259anti-parallel
Strand 4
C
265 269anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 283first strand
Strand 2
C
290 293anti-parallel
Strand 3
C
299 301anti-parallel
Strand 4
C
311 313anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
78 82anti-parallel
Strand 4
E
69 73anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
125 126parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
45 51anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
93 98anti-parallel
Strand 5
E
122 123anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il