Analysis of interatomic Contacts of Structural Units in PDB entry:
8POL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8POL entry

There are 2 chains in PDB entry 8POL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 37	LYS 668
B	GLN 37	LYS 668

There are 41 helices in PDB entry 8POL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	60	Right-handed alpha
Helix 2	AA2	A	75	80	Right-handed 310
Helix 3	AA3	A	81	97	Right-handed alpha
Helix 4	AA4	A	155	158	Right-handed 310
Helix 5	AA5	A	159	169	Right-handed alpha
Helix 6	AA6	A	176	179	Right-handed 310
Helix 7	AA7	A	190	204	Right-handed alpha
Helix 8	AA8	A	339	342	Right-handed 310
Helix 9	AA9	A	343	350	Right-handed alpha
Helix 10	AB1	A	354	362	Right-handed alpha
Helix 11	AB2	A	382	386	Right-handed 310
Helix 12	AB3	A	389	395	Right-handed alpha
Helix 13	AB4	A	427	438	Right-handed alpha
Helix 14	AB5	A	469	482	Right-handed alpha
Helix 15	AB6	A	497	510	Right-handed alpha
Helix 16	AB7	A	531	535	Right-handed 310
Helix 17	AB8	A	543	549	Right-handed 310
Helix 18	AB9	A	607	623	Right-handed alpha
Helix 19	AC1	A	627	638	Right-handed alpha
Helix 20	AC2	A	643	646	Right-handed 310
Helix 21	AC3	A	656	667	Right-handed alpha
Helix 22	AC4	B	39	60	Right-handed alpha
Helix 23	AC5	B	75	80	Right-handed 310
Helix 24	AC6	B	81	97	Right-handed alpha
Helix 25	AC7	B	159	169	Right-handed alpha
Helix 26	AC8	B	176	179	Right-handed 310
Helix 27	AC9	B	190	204	Right-handed alpha
Helix 28	AD1	B	339	342	Right-handed 310
Helix 29	AD2	B	343	350	Right-handed alpha
Helix 30	AD3	B	354	362	Right-handed alpha
Helix 31	AD4	B	382	386	Right-handed 310
Helix 32	AD5	B	389	394	Right-handed alpha
Helix 33	AD6	B	427	438	Right-handed alpha
Helix 34	AD7	B	469	482	Right-handed alpha
Helix 35	AD8	B	497	510	Right-handed alpha
Helix 36	AD9	B	531	535	Right-handed 310
Helix 37	AE1	B	543	549	Right-handed 310
Helix 38	AE2	B	608	623	Right-handed alpha
Helix 39	AE3	B	627	638	Right-handed alpha
Helix 40	AE4	B	643	646	Right-handed 310
Helix 41	AE5	B	656	667	Right-handed alpha

There are 13 sheets in PDB entry 8POL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	B	62	64	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	180	185	anti-parallel
Strand 3	A	138	144	anti-parallel
Strand 4	A	206	210	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	213	216	anti-parallel
Strand 3	A	491	492	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	454	459	parallel
Strand 3	A	367	372	parallel
Strand 4	A	486	489	parallel
Strand 5	A	513	517	parallel
Strand 6	A	553	561	parallel
Strand 7	A	568	570	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	454	459	parallel
Strand 3	A	367	372	parallel
Strand 4	A	486	489	parallel
Strand 5	A	513	517	parallel
Strand 6	A	553	561	parallel
Strand 7	A	583	586	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	598	602	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	641	first strand
Strand 2	A	653	655	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	180	185	anti-parallel
Strand 3	B	138	144	anti-parallel
Strand 4	B	206	210	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	213	216	anti-parallel
Strand 3	B	491	492	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	454	459	parallel
Strand 3	B	367	372	parallel
Strand 4	B	486	489	parallel
Strand 5	B	513	517	parallel
Strand 6	B	553	561	parallel
Strand 7	B	568	570	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	454	459	parallel
Strand 3	B	367	372	parallel
Strand 4	B	486	489	parallel
Strand 5	B	513	517	parallel
Strand 6	B	553	561	parallel
Strand 7	B	583	586	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	594	first strand
Strand 2	B	598	602	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	641	first strand
Strand 2	B	653	655	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8POL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8POL