Analysis of interatomic Contacts of Structural Units in PDB entry:
8POO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8POO entry

There are 8 chains in PDB entry 8POO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	THR 15	GLY 445
J	THR 15	GLY 445
A	THR 15	GLY 445
B	THR 15	GLY 445
C	LYS 7	ASN 282
D	LYS 7	ASN 282
E	LYS 7	ASN 282
G	LYS 7	ASN 282

There are127 helices in PDB entry 8POO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	15	36	Right-handed alpha
Helix 2	AA2	I	52	59	Right-handed alpha
Helix 3	AA3	I	67	72	Right-handed alpha
Helix 4	AA4	I	73	101	Right-handed alpha
Helix 5	AA5	I	128	144	Right-handed alpha
Helix 6	AA6	I	153	157	Right-handed 310
Helix 7	AA7	I	166	173	Right-handed alpha
Helix 8	AA8	I	191	207	Right-handed alpha
Helix 9	AA9	I	208	218	Right-handed alpha
Helix 10	AB1	I	225	250	Right-handed alpha
Helix 11	AB2	I	263	275	Right-handed alpha
Helix 12	AB3	I	290	303	Right-handed alpha
Helix 13	AB4	I	315	330	Right-handed alpha
Helix 14	AB5	I	344	371	Right-handed alpha
Helix 15	AB6	I	376	390	Right-handed alpha
Helix 16	AB7	I	403	419	Right-handed alpha
Helix 17	AB8	I	419	425	Right-handed alpha
Helix 18	AB9	J	16	36	Right-handed alpha
Helix 19	AC1	J	52	59	Right-handed alpha
Helix 20	AC2	J	67	72	Right-handed alpha
Helix 21	AC3	J	73	101	Right-handed alpha
Helix 22	AC4	J	128	144	Right-handed alpha
Helix 23	AC5	J	153	157	Right-handed 310
Helix 24	AC6	J	162	173	Right-handed alpha
Helix 25	AC7	J	191	205	Right-handed alpha
Helix 26	AC8	J	208	218	Right-handed alpha
Helix 27	AC9	J	225	250	Right-handed alpha
Helix 28	AD1	J	263	273	Right-handed alpha
Helix 29	AD2	J	290	303	Right-handed alpha
Helix 30	AD3	J	315	331	Right-handed alpha
Helix 31	AD4	J	345	371	Right-handed alpha
Helix 32	AD5	J	376	390	Right-handed alpha
Helix 33	AD6	J	403	418	Right-handed alpha
Helix 34	AD7	J	419	425	Right-handed alpha
Helix 35	AD8	A	16	36	Right-handed alpha
Helix 36	AD9	A	46	59	Right-handed alpha
Helix 37	AE1	A	67	72	Right-handed alpha
Helix 38	AE2	A	73	101	Right-handed alpha
Helix 39	AE3	A	128	144	Right-handed alpha
Helix 40	AE4	A	153	157	Right-handed 310
Helix 41	AE5	A	160	174	Right-handed alpha
Helix 42	AE6	A	191	205	Right-handed alpha
Helix 43	AE7	A	208	218	Right-handed alpha
Helix 44	AE8	A	225	250	Right-handed alpha
Helix 45	AE9	A	256	260	Right-handed 310
Helix 46	AF1	A	261	275	Right-handed alpha
Helix 47	AF2	A	290	303	Right-handed alpha
Helix 48	AF3	A	315	330	Right-handed alpha
Helix 49	AF4	A	345	371	Right-handed alpha
Helix 50	AF5	A	376	390	Right-handed alpha
Helix 51	AF6	A	403	419	Right-handed alpha
Helix 52	AF7	A	419	425	Right-handed alpha
Helix 53	AF8	B	16	35	Right-handed alpha
Helix 54	AF9	B	52	59	Right-handed alpha
Helix 55	AG1	B	67	72	Right-handed alpha
Helix 56	AG2	B	73	101	Right-handed alpha
Helix 57	AG3	B	128	144	Right-handed alpha
Helix 58	AG4	B	153	157	Right-handed 310
Helix 59	AG5	B	163	173	Right-handed alpha
Helix 60	AG6	B	191	205	Right-handed alpha
Helix 61	AG7	B	208	218	Right-handed alpha
Helix 62	AG8	B	225	250	Right-handed alpha
Helix 63	AG9	B	256	260	Right-handed 310
Helix 64	AH1	B	263	275	Right-handed alpha
Helix 65	AH2	B	290	303	Right-handed alpha
Helix 66	AH3	B	315	330	Right-handed alpha
Helix 67	AH4	B	345	371	Right-handed alpha
Helix 68	AH5	B	376	390	Right-handed alpha
Helix 69	AH6	B	403	418	Right-handed alpha
Helix 70	AH7	B	419	425	Right-handed alpha
Helix 71	AH8	C	15	29	Right-handed alpha
Helix 72	AH9	C	39	45	Right-handed alpha
Helix 73	AI1	C	59	66	Right-handed alpha
Helix 74	AI2	C	67	71	Right-handed 310
Helix 75	AI3	C	81	95	Right-handed alpha
Helix 76	AI4	C	106	117	Right-handed alpha
Helix 77	AI5	C	123	139	Right-handed alpha
Helix 78	AI6	C	157	171	Right-handed alpha
Helix 79	AI7	C	180	187	Right-handed alpha
Helix 80	AI8	C	201	208	Right-handed alpha
Helix 81	AI9	C	209	213	Right-handed 310
Helix 82	AJ1	C	223	237	Right-handed alpha
Helix 83	AJ2	C	248	259	Right-handed alpha
Helix 84	AJ3	C	265	280	Right-handed alpha
Helix 85	AJ4	D	15	29	Right-handed alpha
Helix 86	AJ5	D	39	45	Right-handed alpha
Helix 87	AJ6	D	59	66	Right-handed alpha
Helix 88	AJ7	D	67	71	Right-handed 310
Helix 89	AJ8	D	81	95	Right-handed alpha
Helix 90	AJ9	D	106	117	Right-handed alpha
Helix 91	AK1	D	123	136	Right-handed alpha
Helix 92	AK2	D	157	171	Right-handed alpha
Helix 93	AK3	D	180	187	Right-handed alpha
Helix 94	AK4	D	201	208	Right-handed alpha
Helix 95	AK5	D	209	213	Right-handed 310
Helix 96	AK6	D	223	237	Right-handed alpha
Helix 97	AK7	D	248	259	Right-handed alpha
Helix 98	AK8	D	265	280	Right-handed alpha
Helix 99	AK9	E	15	29	Right-handed alpha
Helix 100	AL1	E	39	45	Right-handed alpha
Helix 101	AL2	E	59	65	Right-handed alpha
Helix 102	AL3	E	67	71	Right-handed 310
Helix 103	AL4	E	81	93	Right-handed alpha
Helix 104	AL5	E	94	96	Right-handed 310
Helix 105	AL6	E	106	117	Right-handed alpha
Helix 106	AL7	E	123	136	Right-handed alpha
Helix 107	AL8	E	157	171	Right-handed alpha
Helix 108	AL9	E	181	187	Right-handed alpha
Helix 109	AM1	E	201	208	Right-handed alpha
Helix 110	AM2	E	209	213	Right-handed 310
Helix 111	AM3	E	223	237	Right-handed alpha
Helix 112	AM4	E	248	259	Right-handed alpha
Helix 113	AM5	E	265	280	Right-handed alpha
Helix 114	AM6	G	15	29	Right-handed alpha
Helix 115	AM7	G	38	45	Right-handed alpha
Helix 116	AM8	G	59	65	Right-handed alpha
Helix 117	AM9	G	67	71	Right-handed 310
Helix 118	AN1	G	81	95	Right-handed alpha
Helix 119	AN2	G	106	117	Right-handed alpha
Helix 120	AN3	G	123	138	Right-handed alpha
Helix 121	AN4	G	157	171	Right-handed alpha
Helix 122	AN5	G	181	187	Right-handed alpha
Helix 123	AN6	G	201	208	Right-handed alpha
Helix 124	AN7	G	209	213	Right-handed 310
Helix 125	AN8	G	223	237	Right-handed alpha
Helix 126	AN9	G	248	259	Right-handed alpha
Helix 127	AO1	G	267	280	Right-handed alpha

There are 8 sheets in PDB entry 8POO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	32	36	parallel
Strand 3	C	9	12	parallel
Strand 4	C	73	76	parallel
Strand 5	C	99	103	parallel
Strand 6	C	120	122	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	196	first strand
Strand 2	C	174	178	parallel
Strand 3	C	151	154	parallel
Strand 4	C	215	218	parallel
Strand 5	C	241	245	parallel
Strand 6	C	262	264	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	32	36	parallel
Strand 3	D	9	12	parallel
Strand 4	D	73	76	parallel
Strand 5	D	99	103	parallel
Strand 6	D	120	122	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	196	first strand
Strand 2	D	174	178	parallel
Strand 3	D	151	154	parallel
Strand 4	D	215	218	parallel
Strand 5	D	241	245	parallel
Strand 6	D	262	264	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	32	36	parallel
Strand 3	E	9	12	parallel
Strand 4	E	73	76	parallel
Strand 5	E	99	103	parallel
Strand 6	E	120	122	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	196	first strand
Strand 2	E	174	178	parallel
Strand 3	E	151	154	parallel
Strand 4	E	215	218	parallel
Strand 5	E	241	245	parallel
Strand 6	E	262	264	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	54	first strand
Strand 2	G	32	36	parallel
Strand 3	G	9	12	parallel
Strand 4	G	73	76	parallel
Strand 5	G	99	103	parallel
Strand 6	G	120	122	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	193	196	first strand
Strand 2	G	174	178	parallel
Strand 3	G	151	154	parallel
Strand 4	G	215	218	parallel
Strand 5	G	241	245	parallel
Strand 6	G	262	264	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8POO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8POO