Analysis of interatomic Contacts of Structural Units in PDB entry:
8POQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8POQ entry

There are 4 chains in PDB entry 8POQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 221	ILE 394
B	GLY 223	ILE 394
C	GLY 223	THR 393
D	GLY 223	THR 393

There are 30 helices in PDB entry 8POQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	243	250	Right-handed 310
Helix 2	AA2	A	259	266	Right-handed alpha
Helix 3	AA3	A	272	276	Right-handed alpha
Helix 4	AA4	A	324	327	Right-handed 310
Helix 5	AA5	A	328	338	Right-handed alpha
Helix 6	AA6	A	350	355	Right-handed alpha
Helix 7	AA7	A	365	369	Right-handed 310
Helix 8	AA8	A	372	387	Right-handed alpha
Helix 9	AA9	B	243	250	Right-handed 310
Helix 10	AB1	B	259	266	Right-handed alpha
Helix 11	AB2	B	270	276	Right-handed alpha
Helix 12	AB3	B	324	327	Right-handed 310
Helix 13	AB4	B	328	338	Right-handed alpha
Helix 14	AB5	B	350	355	Right-handed alpha
Helix 15	AB6	B	365	369	Right-handed 310
Helix 16	AB7	B	372	387	Right-handed alpha
Helix 17	AB8	C	243	250	Right-handed 310
Helix 18	AB9	C	259	265	Right-handed alpha
Helix 19	AC1	C	271	277	Right-handed alpha
Helix 20	AC2	C	324	327	Right-handed 310
Helix 21	AC3	C	328	339	Right-handed alpha
Helix 22	AC4	C	365	369	Right-handed 310
Helix 23	AC5	C	372	387	Right-handed alpha
Helix 24	AC6	D	243	250	Right-handed 310
Helix 25	AC7	D	259	265	Right-handed alpha
Helix 26	AC8	D	272	277	Right-handed alpha
Helix 27	AC9	D	324	327	Right-handed 310
Helix 28	AD1	D	328	338	Right-handed alpha
Helix 29	AD2	D	365	369	Right-handed 310
Helix 30	AD3	D	372	387	Right-handed alpha

There are 12 sheets in PDB entry 8POQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	223	230	anti-parallel
Strand 3	A	288	296	anti-parallel
Strand 4	A	303	309	anti-parallel
Strand 5	A	252	255	parallel
Strand 6	A	320	323	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	223	230	anti-parallel
Strand 3	A	390	393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	288	296	anti-parallel
Strand 4	B	303	309	anti-parallel
Strand 5	B	252	255	parallel
Strand 6	B	320	323	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	390	392	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	241	first strand
Strand 2	C	224	229	anti-parallel
Strand 3	C	390	392	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	296	first strand
Strand 2	C	303	309	anti-parallel
Strand 3	C	252	255	parallel
Strand 4	C	320	323	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	241	first strand
Strand 2	D	224	229	anti-parallel
Strand 3	D	390	392	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	296	first strand
Strand 2	D	303	309	anti-parallel
Strand 3	D	252	255	parallel
Strand 4	D	320	323	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	361	362	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8POQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8POQ