Analysis of interatomic Contacts of Structural Units in PDB entry:
8POT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8POT entry

There are 2 chains in PDB entry 8POT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLY 860
B
 G 1 C 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8POT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
10 22Right-handed alpha
Helix 3
AA3
A
49 69Right-handed alpha
Helix 4
AA4
A
83 93Right-handed alpha
Helix 5
AA5
A
96 115Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
129 146Right-handed alpha
Helix 8
AA8
A
195 197Right-handed 310
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 209Right-handed 310
Helix 11
AB2
A
213 225Right-handed alpha
Helix 12
AB3
A
249 256Right-handed 310
Helix 13
AB4
A
265 272Right-handed alpha
Helix 14
AB5
A
275 287Right-handed alpha
Helix 15
AB6
A
342 353Right-handed alpha
Helix 16
AB7
A
384 388Right-handed 310
Helix 17
AB8
A
391 406Right-handed alpha
Helix 18
AB9
A
446 450Right-handed 310
Helix 19
AC1
A
465 470Right-handed alpha
Helix 20
AC2
A
470 474Right-handed alpha
Helix 21
AC3
A
492 497Right-handed alpha
Helix 22
AC4
A
498 503Right-handed alpha
Helix 23
AC5
A
514 522Right-handed alpha
Helix 24
AC6
A
530 534Right-handed 310
Helix 25
AC7
A
536 551Right-handed alpha
Helix 26
AC8
A
587 589Right-handed 310
Helix 27
AC9
A
629 638Right-handed alpha
Helix 28
AD1
A
638 649Right-handed alpha
Helix 29
AD2
A
659 682Right-handed alpha
Helix 30
AD3
A
695 718Right-handed alpha
Helix 31
AD4
A
721 737Right-handed alpha
Helix 32
AD5
A
743 762Right-handed alpha
Helix 33
AD6
A
765 776Right-handed alpha
Helix 34
AD7
A
792 796Right-handed 310
Helix 35
AD8
A
821 832Right-handed alpha
Helix 36
AD9
A
832 838Right-handed alpha
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There are 11 sheets in PDB entry 8POT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
34 39parallel
Strand 3
A
524 529parallel
Strand 4
A
560 565parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
125 126parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 155first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
420 421anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 247first strand
Strand 2
A
227 237anti-parallel
Strand 3
A
302 310anti-parallel
Strand 4
A
317 323anti-parallel
Strand 5
A
258 262parallel
Strand 6
A
334 337anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 247first strand
Strand 2
A
227 237anti-parallel
Strand 3
A
409 414anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 424first strand
Strand 2
A
489 490anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
434 437anti-parallel
Strand 3
A
481 485anti-parallel
Strand 4
A
475 478anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
569 577anti-parallel
Strand 3
A
613 619anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
583 586first strand
Strand 2
A
569 577anti-parallel
Strand 3
A
656 657parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 595first strand
Strand 2
A
601 606anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 817first strand
Strand 2
A
799 806anti-parallel
Strand 3
A
854 857parallel
Strand 4
A
848 850anti-parallel
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