Analysis of interatomic Contacts of Structural Units in PDB entry:
8POX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8POX entry

There are 2 chains in PDB entry 8POX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ALA 3	HIS 603
S	PRO 5	GLY 274

There are 46 helices in PDB entry 8POX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	54	59	Right-handed alpha
Helix 2	AA2	L	63	65	Right-handed 310
Helix 3	AA3	L	66	73	Right-handed alpha
Helix 4	AA4	L	80	95	Right-handed alpha
Helix 5	AA5	L	99	125	Right-handed alpha
Helix 6	AA6	L	126	130	Right-handed 310
Helix 7	AA7	L	132	139	Right-handed alpha
Helix 8	AA8	L	140	152	Right-handed alpha
Helix 9	AA9	L	159	176	Right-handed alpha
Helix 10	AB1	L	179	183	Right-handed 310
Helix 11	AB2	L	195	217	Right-handed alpha
Helix 12	AB3	L	217	225	Right-handed alpha
Helix 13	AB4	L	247	251	Right-handed 310
Helix 14	AB5	L	254	275	Right-handed alpha
Helix 15	AB6	L	275	290	Right-handed alpha
Helix 16	AB7	L	296	301	Right-handed 310
Helix 17	AB8	L	315	317	Right-handed 310
Helix 18	AB9	L	364	368	Right-handed 310
Helix 19	AC1	L	412	426	Right-handed alpha
Helix 20	AC2	L	427	430	Right-handed 310
Helix 21	AC3	L	431	447	Right-handed alpha
Helix 22	AC4	L	447	454	Right-handed alpha
Helix 23	AC5	L	461	466	Right-handed alpha
Helix 24	AC6	L	468	500	Right-handed alpha
Helix 25	AC7	L	512	516	Right-handed 310
Helix 26	AC8	L	551	558	Right-handed alpha
Helix 27	AC9	L	567	574	Right-handed alpha
Helix 28	AD1	L	584	594	Right-handed alpha
Helix 29	AD2	L	597	603	Right-handed alpha
Helix 30	AD3	S	18	26	Right-handed alpha
Helix 31	AD4	S	31	39	Right-handed alpha
Helix 32	AD5	S	52	67	Right-handed alpha
Helix 33	AD6	S	82	86	Right-handed 310
Helix 34	AD7	S	95	104	Right-handed alpha
Helix 35	AD8	S	113	118	Right-handed alpha
Helix 36	AD9	S	120	124	Right-handed 310
Helix 37	AE1	S	133	137	Right-handed 310
Helix 38	AE2	S	152	167	Right-handed alpha
Helix 39	AE3	S	178	183	Right-handed alpha
Helix 40	AE4	S	185	190	Right-handed alpha
Helix 41	AE5	S	192	198	Right-handed alpha
Helix 42	AE6	S	207	212	Right-handed alpha
Helix 43	AE7	S	216	220	Right-handed 310
Helix 44	AE8	S	222	226	Right-handed 310
Helix 45	AE9	S	256	260	Right-handed 310
Helix 46	AF1	S	269	274	Right-handed 310

There are 9 sheets in PDB entry 8POX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	9	11	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	16	20	first strand
Strand 2	L	30	36	anti-parallel
Strand 3	L	42	49	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	303	305	first strand
Strand 2	L	324	326	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	308	310	first strand
Strand 2	L	319	321	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	345	348	first strand
Strand 2	L	401	404	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	381	383	first strand
Strand 2	L	386	389	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	519	528	first strand
Strand 2	L	531	540	anti-parallel
Strand 3	L	543	550	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	40	45	first strand
Strand 2	S	7	13	parallel
Strand 3	S	72	76	parallel
Strand 4	S	108	112	parallel
Strand 5	S	143	146	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	89	90	first strand
Strand 2	S	93	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8POX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8POX