Analysis of interatomic Contacts of Structural Units in PDB entry:
8PP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PP7 entry

There are 14 chains in PDB entry 8PP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	ARG 3	ALA 107
L	LYS 15	PRO 115
M	ARG 3	PRO 102
N	THR 16	PRO 115
A	LYS 37	ARG 134
B	VAL 21	GLY 101
C	LYS 12	LYS 117
D	ARG 28	SER 121
E	LYS 37	ARG 134
F	LYS 20	GLY 101
G	GLY 11	LYS 117
H	LYS 29	SER 121
J	A -77	T 75
I	A -75	T 153

There are 55 helices in PDB entry 8PP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	9	13	Right-handed alpha
Helix 2	AA2	K	14	17	Right-handed 310
Helix 3	AA3	K	40	50	Right-handed alpha
Helix 4	AA4	K	64	67	Right-handed 310
Helix 5	AA5	K	72	83	Right-handed alpha
Helix 6	AA6	K	86	99	Right-handed alpha
Helix 7	AA7	L	73	82	Right-handed alpha
Helix 8	AA8	L	96	98	Right-handed 310
Helix 9	AA9	L	103	114	Right-handed alpha
Helix 10	AB1	M	9	13	Right-handed alpha
Helix 11	AB2	M	14	17	Right-handed 310
Helix 12	AB3	M	40	48	Right-handed alpha
Helix 13	AB4	M	64	67	Right-handed 310
Helix 14	AB5	M	72	83	Right-handed alpha
Helix 15	AB6	M	86	101	Right-handed alpha
Helix 16	AB7	N	22	26	Right-handed 310
Helix 17	AB8	N	41	46	Right-handed 310
Helix 18	AB9	N	73	82	Right-handed alpha
Helix 19	AC1	N	96	98	Right-handed 310
Helix 20	AC2	N	103	114	Right-handed alpha
Helix 21	AC3	A	44	55	Right-handed alpha
Helix 22	AC4	A	63	76	Right-handed alpha
Helix 23	AC5	A	85	114	Right-handed alpha
Helix 24	AC6	A	120	132	Right-handed alpha
Helix 25	AC7	B	25	29	Right-handed 310
Helix 26	AC8	B	30	42	Right-handed alpha
Helix 27	AC9	B	50	76	Right-handed alpha
Helix 28	AD1	B	82	94	Right-handed alpha
Helix 29	AD2	C	15	21	Right-handed alpha
Helix 30	AD3	C	25	35	Right-handed alpha
Helix 31	AD4	C	45	72	Right-handed alpha
Helix 32	AD5	C	78	89	Right-handed alpha
Helix 33	AD6	C	89	96	Right-handed alpha
Helix 34	AD7	D	34	46	Right-handed alpha
Helix 35	AD8	D	52	81	Right-handed alpha
Helix 36	AD9	D	87	99	Right-handed alpha
Helix 37	AE1	D	100	120	Right-handed alpha
Helix 38	AE2	E	44	55	Right-handed alpha
Helix 39	AE3	E	63	76	Right-handed alpha
Helix 40	AE4	E	85	114	Right-handed alpha
Helix 41	AE5	E	120	131	Right-handed alpha
Helix 42	AE6	F	24	29	Right-handed 310
Helix 43	AE7	F	30	41	Right-handed alpha
Helix 44	AE8	F	49	76	Right-handed alpha
Helix 45	AE9	F	82	93	Right-handed alpha
Helix 46	AF1	G	15	21	Right-handed alpha
Helix 47	AF2	G	25	36	Right-handed alpha
Helix 48	AF3	G	45	72	Right-handed alpha
Helix 49	AF4	G	78	88	Right-handed alpha
Helix 50	AF5	G	89	96	Right-handed alpha
Helix 51	AF6	G	111	115	Right-handed 310
Helix 52	AF7	H	34	46	Right-handed alpha
Helix 53	AF8	H	52	81	Right-handed alpha
Helix 54	AF9	H	87	99	Right-handed alpha
Helix 55	AG1	H	101	120	Right-handed alpha

There are 14 sheets in PDB entry 8PP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	8	first strand
Strand 2	L	37	40	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	39	first strand
Strand 2	K	28	31	anti-parallel
Strand 3	K	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	70	72	first strand
Strand 2	L	61	64	anti-parallel
Strand 3	L	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	8	first strand
Strand 2	N	37	40	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	37	39	first strand
Strand 2	M	28	31	anti-parallel
Strand 3	M	69	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	72	first strand
Strand 2	N	61	64	anti-parallel
Strand 3	N	100	102	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	99	101	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	D	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	F	96	98	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	42	first strand
Strand 2	H	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	77	first strand
Strand 2	H	50	51	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PP7