Analysis of interatomic Contacts of Structural Units in PDB entry:
8PPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PPO entry

There are 16 chains in PDB entry 8PPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 302SER 316
B
 GLY 302SER 316
C
 GLY 302SER 316
D
 GLY 302SER 316
E
 GLY 302SER 316
F
 GLY 302SER 316
G
 GLY 302SER 316
H
 GLY 302SER 316
I
 GLY 302SER 316
J
 GLY 302SER 316
K
 GLY 302SER 316
L
 GLY 302SER 316
M
 GLY 302SER 316
N
 GLY 302SER 316
O
 GLY 302SER 316
P
 GLY 302SER 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8PPO

There are 4 sheets in PDB entry 8PPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 310first strand
Strand 2
B
306 310parallel
Strand 3
C
306 310parallel
Strand 4
D
306 310parallel
Strand 5
E
306 310parallel
Strand 6
F
306 310parallel
Strand 7
G
306 310parallel
Strand 8
H
306 310parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
B
313 314parallel
Strand 3
C
313 314parallel
Strand 4
D
313 314parallel
Strand 5
E
313 314parallel
Strand 6
F
313 314parallel
Strand 7
G
313 314parallel
Strand 8
H
313 314parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
306 310first strand
Strand 2
J
306 310parallel
Strand 3
K
306 310parallel
Strand 4
L
306 310parallel
Strand 5
M
306 310parallel
Strand 6
N
306 310parallel
Strand 7
O
306 310parallel
Strand 8
P
306 310parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
313 314first strand
Strand 2
J
313 314parallel
Strand 3
K
313 314parallel
Strand 4
L
313 315parallel
Strand 5
M
313 315parallel
Strand 6
N
313 315parallel
Strand 7
O
313 315parallel
Strand 8
P
313 315parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il