Analysis of interatomic Contacts of Structural Units in PDB entry:
8PPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PPS entry

There are 2 chains in PDB entry 8PPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 546ARG 797
B
 GLY 546ARG 797
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8PPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
547 561Right-handed alpha
Helix 2
AA2
A
599 602Right-handed 310
Helix 3
AA3
A
603 610Right-handed alpha
Helix 4
AA4
A
612 633Right-handed alpha
Helix 5
AA5
A
648 653Right-handed alpha
Helix 6
AA6
A
656 669Right-handed alpha
Helix 7
AA7
A
671 673Right-handed 310
Helix 8
AA8
A
681 687Right-handed alpha
Helix 9
AA9
A
687 702Right-handed alpha
Helix 10
AB1
A
717 723Right-handed 310
Helix 11
AB2
A
731 737Right-handed alpha
Helix 12
AB3
A
741 759Right-handed alpha
Helix 13
AB4
A
769 780Right-handed alpha
Helix 14
AB5
B
547 561Right-handed alpha
Helix 15
AB6
B
599 602Right-handed 310
Helix 16
AB7
B
603 610Right-handed alpha
Helix 17
AB8
B
612 633Right-handed alpha
Helix 18
AB9
B
648 653Right-handed alpha
Helix 19
AC1
B
655 669Right-handed alpha
Helix 20
AC2
B
671 673Right-handed 310
Helix 21
AC3
B
681 686Right-handed alpha
Helix 22
AC4
B
687 702Right-handed alpha
Helix 23
AC5
B
716 723Right-handed 310
Helix 24
AC6
B
731 737Right-handed alpha
Helix 25
AC7
B
741 758Right-handed alpha
Helix 26
AC8
B
769 780Right-handed alpha
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There are 4 sheets in PDB entry 8PPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
582 591anti-parallel
Strand 3
A
564 573anti-parallel
Strand 4
A
793 794anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
582 591anti-parallel
Strand 3
A
640 646parallel
Strand 4
A
675 680parallel
Strand 5
A
704 710parallel
Strand 6
A
727 730parallel
Strand 7
A
761 764parallel
Strand 8
A
783 784parallel
Strand 9
A
564 573anti-parallel
Strand 10
A
793 794anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 598first strand
Strand 2
B
582 591anti-parallel
Strand 3
B
564 573anti-parallel
Strand 4
B
793 794anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
597 598first strand
Strand 2
B
582 591anti-parallel
Strand 3
B
640 646parallel
Strand 4
B
675 680parallel
Strand 5
B
704 710parallel
Strand 6
B
727 730parallel
Strand 7
B
761 764parallel
Strand 8
B
783 784parallel
Strand 9
B
564 573anti-parallel
Strand 10
B
793 794anti-parallel
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