Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PQ5 entry

There are 3 chains in PDB entry 8PQ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PRO 1224
B
 MET 1GLY 1217
C
 LYS 558PHE 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8PQ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 49Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
113 122Right-handed alpha
Helix 4
AA4
A
123 125Right-handed 310
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
147 158Right-handed alpha
Helix 7
AA7
A
159 160Right-handed 310
Helix 8
AA8
A
161 163Right-handed 310
Helix 9
AA9
A
164 169Right-handed alpha
Helix 10
AB1
A
171 181Right-handed alpha
Helix 11
AB2
A
1053 1090Right-handed alpha
Helix 12
AB3
A
1129 1131Right-handed 310
Helix 13
AB4
A
1132 1147Right-handed alpha
Helix 14
AB5
A
1163 1176Right-handed alpha
Helix 15
AB6
B
37 50Right-handed alpha
Helix 16
AB7
B
51 54Right-handed 310
Helix 17
AB8
B
59 64Right-handed alpha
Helix 18
AB9
B
118 128Right-handed alpha
Helix 19
AC1
B
142 147Right-handed alpha
Helix 20
AC2
B
151 164Right-handed alpha
Helix 21
AC3
B
165 182Right-handed alpha
Helix 22
AC4
B
182 193Right-handed alpha
Helix 23
AC5
B
1006 1048Right-handed alpha
Helix 24
AC6
B
1111 1115Right-handed 310
Helix 25
AC7
B
1119 1135Right-handed alpha
Helix 26
AC8
B
1150 1165Right-handed alpha
Helix 27
AC9
B
1176 1181Right-handed alpha
Helix 28
AD1
B
1202 1210Right-handed alpha
Helix 29
AD2
C
559 563Right-handed alpha
Helix 30
AD3
C
589 603Right-handed alpha
Helix 31
AD4
C
604 607Right-handed 310
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There are 6 sheets in PDB entry 8PQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
92 99anti-parallel
Strand 5
A
102 107anti-parallel
Strand 6
A
111 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1152 1154first strand
Strand 2
A
1183 1187parallel
Strand 3
A
27 30parallel
Strand 4
A
1200 1206parallel
Strand 5
A
1212 1216anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1099first strand
Strand 2
A
1112 1116anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
76 82anti-parallel
Strand 3
B
97 102anti-parallel
Strand 4
B
109 111anti-parallel
Strand 5
B
115 116anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1139 1141first strand
Strand 2
B
1169 1171parallel
Strand 3
B
27 32parallel
Strand 4
B
1185 1192parallel
Strand 5
B
1195 1199anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1054 1057first strand
Strand 2
B
1096 1099anti-parallel
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