Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PQ7 entry

There are 4 chains in PDB entry 8PQ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8LYS 295
B
 ASP 68ASN 143
C
 VAL 7LYS 295
D
 LEU 69VAL 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8PQ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 20Right-handed alpha
Helix 2
AA2
A
29 47Right-handed alpha
Helix 3
AA3
A
66 78Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
125 133Right-handed alpha
Helix 6
AA6
A
133 142Right-handed alpha
Helix 7
AA7
A
143 155Right-handed alpha
Helix 8
AA8
A
181 186Right-handed alpha
Helix 9
AA9
A
197 205Right-handed alpha
Helix 10
AB1
A
226 237Right-handed alpha
Helix 11
AB2
A
269 273Right-handed 310
Helix 12
AB3
B
74 84Right-handed alpha
Helix 13
AB4
B
84 96Right-handed alpha
Helix 14
AB5
B
99 108Right-handed alpha
Helix 15
AB6
B
111 121Right-handed alpha
Helix 16
AB7
C
8 21Right-handed alpha
Helix 17
AB8
C
29 47Right-handed alpha
Helix 18
AB9
C
66 78Right-handed alpha
Helix 19
AC1
C
97 112Right-handed alpha
Helix 20
AC2
C
125 133Right-handed alpha
Helix 21
AC3
C
133 142Right-handed alpha
Helix 22
AC4
C
143 155Right-handed alpha
Helix 23
AC5
C
181 186Right-handed alpha
Helix 24
AC6
C
197 205Right-handed alpha
Helix 25
AC7
C
226 237Right-handed alpha
Helix 26
AC8
C
269 273Right-handed 310
Helix 27
AC9
D
74 84Right-handed alpha
Helix 28
AD1
D
84 96Right-handed alpha
Helix 29
AD2
D
99 108Right-handed alpha
Helix 30
AD3
D
111 121Right-handed alpha
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There are 6 sheets in PDB entry 8PQ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
160 163parallel
Strand 3
A
167 170anti-parallel
Strand 4
A
241 244parallel
Strand 5
A
261 264parallel
Strand 6
A
253 256anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
85 87parallel
Strand 3
A
57 60parallel
Strand 4
A
278 283anti-parallel
Strand 5
A
288 294anti-parallel
Strand 6
B
140 141parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
223 225parallel
Strand 3
A
214 216anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
160 163parallel
Strand 3
C
167 169anti-parallel
Strand 4
C
241 244parallel
Strand 5
C
261 264parallel
Strand 6
C
251 256anti-parallel
Strand 7
C
277 283parallel
Strand 8
C
57 60anti-parallel
Strand 9
C
85 87parallel
Strand 10
C
116 118parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 53first strand
Strand 2
C
160 163parallel
Strand 3
C
167 169anti-parallel
Strand 4
C
241 244parallel
Strand 5
C
261 264parallel
Strand 6
C
251 256anti-parallel
Strand 7
C
277 283parallel
Strand 8
C
288 294anti-parallel
Strand 9
D
140 141parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 207first strand
Strand 2
C
223 225parallel
Strand 3
C
214 216anti-parallel
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