Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PQJ entry

There is 1 chain in PDB entry 8PQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 553ASP 973
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
576 580Right-handed 310
Helix 2
AA2
A
583 587Right-handed 310
Helix 3
AA3
A
589 591Right-handed 310
Helix 4
AA4
A
634 652Right-handed alpha
Helix 5
AA5
A
682 690Right-handed alpha
Helix 6
AA6
A
691 693Right-handed 310
Helix 7
AA7
A
791 812Right-handed alpha
Helix 8
AA8
A
820 822Right-handed 310
Helix 9
AA9
A
837 841Right-handed 310
Helix 10
AB1
A
842 846Right-handed 310
Helix 11
AB2
A
858 862Right-handed 310
Helix 12
AB3
A
863 870Right-handed alpha
Helix 13
AB4
A
873 890Right-handed alpha
Helix 14
AB5
A
902 911Right-handed alpha
Helix 15
AB6
A
922 933Right-handed alpha
Helix 16
AB7
A
936 940Right-handed 310
Helix 17
AB8
A
942 952Right-handed alpha
Helix 18
AB9
A
955 972Right-handed alpha
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There are 4 sheets in PDB entry 8PQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 561first strand
Strand 2
A
814 815anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 601first strand
Strand 2
A
605 613anti-parallel
Strand 3
A
621 629anti-parallel
Strand 4
A
671 675anti-parallel
Strand 5
A
660 664anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
680 681first strand
Strand 2
A
824 827anti-parallel
Strand 3
A
831 834anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 852first strand
Strand 2
A
855 857anti-parallel
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