Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PQL entry

There are 8 chains in PDB entry 8PQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 6ILE 192
E
 MET 1ARG 704
H
 THR 5ARG 617
K
 ARG 21LYS 105
U
 MET 1GLY 75
A
 MET 1LYS 647
D
 MET 17ASP 111
G
 MET 1PRO 97
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 8PQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
7 21Right-handed alpha
Helix 2
2
C
119 133Right-handed alpha
Helix 3
3
C
141 154Right-handed alpha
Helix 4
4
C
159 179Right-handed alpha
Helix 5
5
C
186 191Right-handed alpha
Helix 6
6
E
22 34Right-handed alpha
Helix 7
11
E
37 41Right-handed alpha
Helix 8
7
E
56 59Right-handed alpha
Helix 9
8
K
55 58Right-handed alpha
Helix 10
9
K
81 89Right-handed alpha
Helix 11
10
U
22 34Right-handed alpha
Helix 12
11
U
37 41Right-handed alpha
Helix 13
11
U
56 59Right-handed alpha
Helix 14
12
A
12 19Right-handed alpha
Helix 15
13
A
21 25Right-handed alpha
Helix 16
14
A
33 46Right-handed alpha
Helix 17
17
A
53 79Right-handed alpha
Helix 18
18
A
86 104Right-handed alpha
Helix 19
19
A
106 111Right-handed alpha
Helix 20
20
A
139 152Right-handed alpha
Helix 21
21
A
156 170Right-handed alpha
Helix 22
22
A
178 189Right-handed alpha
Helix 23
23
A
200 228Right-handed alpha
Helix 24
24
A
235 251Right-handed alpha
Helix 25
24
A
259 274Right-handed alpha
Helix 26
25
A
278 285Right-handed alpha
Helix 27
27
A
291 303Right-handed alpha
Helix 28
28
A
308 328Right-handed alpha
Helix 29
29
A
337 358Right-handed alpha
Helix 30
30
A
362 376Right-handed alpha
Helix 31
31
A
387 398Right-handed alpha
Helix 32
32
A
410 424Right-handed alpha
Helix 33
33
A
429 444Right-handed alpha
Helix 34
34
A
453 465Right-handed alpha
Helix 35
35
A
471 496Right-handed alpha
Helix 36
1
A
531 547Right-handed alpha
Helix 37
3
A
579 589Right-handed alpha
Helix 38
4
A
596 603Right-handed alpha
Helix 39
5
A
607 619Right-handed alpha
Helix 40
38
H
6 11Right-handed alpha
Helix 41
39
H
17 20Right-handed alpha
Helix 42
40
H
44 50Right-handed alpha
Helix 43
41
H
54 63Right-handed alpha
Helix 44
42
H
86 91Right-handed alpha
Helix 45
43
H
96 105Right-handed alpha
Helix 46
44
H
119 126Right-handed alpha
Helix 47
45
H
129 137Right-handed alpha
Helix 48
46
H
152 159Right-handed alpha
Helix 49
47
H
162 171Right-handed alpha
Helix 50
48
H
185 191Right-handed alpha
Helix 51
50
H
195 204Right-handed alpha
Helix 52
51
H
217 224Right-handed alpha
Helix 53
52
H
228 235Right-handed alpha
Helix 54
53
H
241 257Right-handed alpha
Helix 55
54
H
262 278Right-handed alpha
Helix 56
55
H
305 308Right-handed alpha
Helix 57
57
H
315 329Right-handed alpha
Helix 58
58
H
335 351Right-handed alpha
Helix 59
59
H
355 368Right-handed alpha
Helix 60
60
H
377 393Right-handed alpha
Helix 61
62
H
408 427Right-handed alpha
Helix 62
63
H
435 454Right-handed alpha
Helix 63
64
H
459 475Right-handed alpha
Helix 64
65
H
485 490Right-handed alpha
Helix 65
66
H
508 517Right-handed alpha
Helix 66
67
H
531 538Right-handed alpha
Helix 67
68
H
541 550Right-handed alpha
Helix 68
69
H
570 575Right-handed alpha
Helix 69
70
H
580 583Right-handed alpha
Helix 70
71
H
586 597Right-handed alpha
Helix 71
72
H
607 616Right-handed alpha
Helix 72
73
D
33 38Right-handed alpha
Helix 73
74
D
40 44Right-handed alpha
Helix 74
75
D
67 83Right-handed alpha
Helix 75
76
D
97 109Right-handed alpha
Helix 76
77
G
24 35Right-handed alpha
Helix 77
78
G
39 41Right-handed alpha
Helix 78
79
G
57 60Right-handed alpha
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There are 26 sheets in PDB entry 8PQL. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, A, B, 23, 24, 25,

There are 1 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
42 45first strand
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There are 1 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
73 79first strand
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There are 1 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
2 8first strand
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There are 1 strands in 4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 19first strand
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There are 1 strands in 6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 23first strand
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There are 1 strands in 7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 61first strand
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There are 1 strands in 8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
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There are 1 strands in 9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 46first strand
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There are 1 strands in 10 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 63first strand
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There are 1 strands in 11 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 77first strand
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There are 1 strands in 12 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
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There are 1 strands in 13 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2 6first strand
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There are 1 strands in 14 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
66 70first strand
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There are 1 strands in 15 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
42 44first strand
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There are 1 strands in 16 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
12 16first strand
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There are 1 strands in 17 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
2 6first strand
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There are 1 strands in 18 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
66 70first strand
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There are 1 strands in 19 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
42 44first strand
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There are 1 strands in 20 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 512first strand
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There are 1 strands in 21 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
27 34first strand
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There are 1 strands in 22 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 566first strand
Strand 2
A
573 578anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
637 640anti-parallel
Strand 3
A
623 625anti-parallel
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There are 1 strands in 23 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
70 72first strand
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There are 1 strands in 24 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
78 80first strand
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There are 1 strands in 25 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
26 32first strand
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