Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PQN entry

There are 4 chains in PDB entry 8PQN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LYS 273
B
 VAL 1LYS 273
C
 VAL 1LYS 273
D
 VAL 1LYS 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8PQN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
51 55Right-handed 310
Helix 3
AA3
A
66 78Right-handed alpha
Helix 4
AA4
A
81 94Right-handed alpha
Helix 5
AA5
A
109 120Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
164 173Right-handed alpha
Helix 8
AA8
A
175 180Right-handed alpha
Helix 9
AA9
A
198 211Right-handed alpha
Helix 10
AB1
A
224 228Right-handed 310
Helix 11
AB2
A
239 246Right-handed alpha
Helix 12
AB3
B
16 31Right-handed alpha
Helix 13
AB4
B
51 55Right-handed 310
Helix 14
AB5
B
66 78Right-handed alpha
Helix 15
AB6
B
81 94Right-handed alpha
Helix 16
AB7
B
109 120Right-handed alpha
Helix 17
AB8
B
131 135Right-handed 310
Helix 18
AB9
B
164 173Right-handed alpha
Helix 19
AC1
B
175 180Right-handed alpha
Helix 20
AC2
B
198 211Right-handed alpha
Helix 21
AC3
B
224 228Right-handed 310
Helix 22
AC4
B
241 246Right-handed alpha
Helix 23
AC5
C
16 31Right-handed alpha
Helix 24
AC6
C
51 55Right-handed 310
Helix 25
AC7
C
66 78Right-handed alpha
Helix 26
AC8
C
81 94Right-handed alpha
Helix 27
AC9
C
109 120Right-handed alpha
Helix 28
AD1
C
131 135Right-handed 310
Helix 29
AD2
C
164 173Right-handed alpha
Helix 30
AD3
C
175 180Right-handed alpha
Helix 31
AD4
C
198 211Right-handed alpha
Helix 32
AD5
C
224 228Right-handed 310
Helix 33
AD6
C
241 246Right-handed alpha
Helix 34
AD7
D
16 31Right-handed alpha
Helix 35
AD8
D
51 55Right-handed 310
Helix 36
AD9
D
66 78Right-handed alpha
Helix 37
AE1
D
81 94Right-handed alpha
Helix 38
AE2
D
109 120Right-handed alpha
Helix 39
AE3
D
131 135Right-handed 310
Helix 40
AE4
D
164 173Right-handed alpha
Helix 41
AE5
D
175 180Right-handed alpha
Helix 42
AE6
D
198 212Right-handed alpha
Helix 43
AE7
D
224 228Right-handed 310
Helix 44
AE8
D
241 246Right-handed alpha
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There are 8 sheets in PDB entry 8PQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
6 9parallel
Strand 3
A
96 102parallel
Strand 4
A
141 147parallel
Strand 5
A
182 183parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
6 9parallel
Strand 3
A
96 102parallel
Strand 4
A
141 147parallel
Strand 5
A
187 189parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
6 9parallel
Strand 3
B
96 102parallel
Strand 4
B
141 147parallel
Strand 5
B
182 183parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
6 9parallel
Strand 3
B
96 102parallel
Strand 4
B
141 147parallel
Strand 5
B
187 189parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
6 9parallel
Strand 3
C
96 102parallel
Strand 4
C
141 147parallel
Strand 5
C
182 183parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
6 9parallel
Strand 3
C
96 102parallel
Strand 4
C
141 147parallel
Strand 5
C
187 189parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
6 9parallel
Strand 3
D
96 102parallel
Strand 4
D
141 147parallel
Strand 5
D
182 183parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 38first strand
Strand 2
D
6 9parallel
Strand 3
D
96 102parallel
Strand 4
D
141 147parallel
Strand 5
D
187 189parallel
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