Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PQV entry

There is 1 chain in PDB entry 8PQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1327TYR 4610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 8PQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1327 1348Right-handed alpha
Helix 2
AA2
A
1355 1372Right-handed alpha
Helix 3
AA3
A
1380 1396Right-handed alpha
Helix 4
AA4
A
1396 1404Right-handed alpha
Helix 5
AA5
A
1409 1421Right-handed alpha
Helix 6
AA6
A
1430 1437Right-handed alpha
Helix 7
AA7
A
1442 1472Right-handed alpha
Helix 8
AA8
A
1489 1508Right-handed alpha
Helix 9
AA9
A
1516 1552Right-handed alpha
Helix 10
AB1
A
1556 1561Right-handed alpha
Helix 11
AB2
A
1561 1585Right-handed alpha
Helix 12
AB3
A
1587 1592Right-handed alpha
Helix 13
AB4
A
1596 1626Right-handed alpha
Helix 14
AB5
A
1627 1632Right-handed 310
Helix 15
AB6
A
1633 1643Right-handed alpha
Helix 16
AB7
A
1647 1652Right-handed 310
Helix 17
AB8
A
1653 1658Right-handed alpha
Helix 18
AB9
A
1697 1728Right-handed alpha
Helix 19
AC1
A
1734 1745Right-handed alpha
Helix 20
AC2
A
1746 1770Right-handed alpha
Helix 21
AC3
A
1775 1796Right-handed alpha
Helix 22
AC4
A
1801 1828Right-handed alpha
Helix 23
AC5
A
1835 1840Right-handed alpha
Helix 24
AC6
A
1882 1898Right-handed alpha
Helix 25
AC7
A
1911 1923Right-handed alpha
Helix 26
AC8
A
1940 1952Right-handed alpha
Helix 27
AC9
A
1959 1963Right-handed 310
Helix 28
AD1
A
1964 1985Right-handed alpha
Helix 29
AD2
A
1989 1993Right-handed 310
Helix 30
AD3
A
2045 2056Right-handed alpha
Helix 31
AD4
A
2061 2080Right-handed alpha
Helix 32
AD5
A
2089 2118Right-handed alpha
Helix 33
AD6
A
2123 2130Right-handed alpha
Helix 34
AD7
A
2133 2146Right-handed alpha
Helix 35
AD8
A
2147 2149Right-handed 310
Helix 36
AD9
A
2153 2165Right-handed alpha
Helix 37
AE1
A
2175 2189Right-handed alpha
Helix 38
AE2
A
2200 2217Right-handed alpha
Helix 39
AE3
A
2229 2245Right-handed alpha
Helix 40
AE4
A
2260 2265Right-handed alpha
Helix 41
AE5
A
2278 2290Right-handed alpha
Helix 42
AE6
A
2293 2297Right-handed 310
Helix 43
AE7
A
2315 2320Right-handed alpha
Helix 44
AE8
A
2352 2357Right-handed alpha
Helix 45
AE9
A
2365 2369Right-handed 310
Helix 46
AF1
A
2370 2383Right-handed alpha
Helix 47
AF2
A
2410 2424Right-handed alpha
Helix 48
AF3
A
2432 2441Right-handed alpha
Helix 49
AF4
A
2450 2476Right-handed alpha
Helix 50
AF5
A
2482 2504Right-handed alpha
Helix 51
AF6
A
2507 2522Right-handed alpha
Helix 52
AF7
A
2533 2535Right-handed 310
Helix 53
AF8
A
2571 2585Right-handed alpha
Helix 54
AF9
A
2600 2612Right-handed alpha
Helix 55
AG1
A
2627 2638Right-handed alpha
Helix 56
AG2
A
2677 2690Right-handed alpha
Helix 57
AG3
A
2724 2729Right-handed alpha
Helix 58
AG4
A
2739 2756Right-handed alpha
Helix 59
AG5
A
2766 2784Right-handed alpha
Helix 60
AG6
A
2795 2810Right-handed alpha
Helix 61
AG7
A
2817 2834Right-handed alpha
Helix 62
AG8
A
2835 2837Right-handed 310
Helix 63
AG9
A
2839 2858Right-handed alpha
Helix 64
AH1
A
2862 2867Right-handed alpha
Helix 65
AH2
A
2886 2902Right-handed alpha
Helix 66
AH3
A
2912 2928Right-handed alpha
Helix 67
AH4
A
2945 2954Right-handed alpha
Helix 68
AH5
A
2968 2985Right-handed alpha
Helix 69
AH6
A
3003 3007Right-handed 310
Helix 70
AH7
A
3008 3014Right-handed alpha
Helix 71
AH8
A
3023 3040Right-handed alpha
Helix 72
AH9
A
3046 3062Right-handed alpha
Helix 73
AI1
A
3082 3089Right-handed alpha
Helix 74
AI2
A
3098 3110Right-handed alpha
Helix 75
AI3
A
3138 3165Right-handed alpha
Helix 76
AI4
A
3172 3219Right-handed alpha
Helix 77
AI5
A
3471 3516Right-handed alpha
Helix 78
AI6
A
3521 3539Right-handed alpha
Helix 79
AI7
A
3548 3554Right-handed alpha
Helix 80
AI8
A
3555 3565Right-handed alpha
Helix 81
AI9
A
3570 3580Right-handed alpha
Helix 82
AJ1
A
3594 3604Right-handed alpha
Helix 83
AJ2
A
3605 3608Right-handed 310
Helix 84
AJ3
A
3619 3630Right-handed alpha
Helix 85
AJ4
A
3642 3644Right-handed 310
Helix 86
AJ5
A
3645 3651Right-handed alpha
Helix 87
AJ6
A
3689 3694Right-handed alpha
Helix 88
AJ7
A
3704 3721Right-handed alpha
Helix 89
AJ8
A
3721 3733Right-handed alpha
Helix 90
AJ9
A
3735 3751Right-handed alpha
Helix 91
AK1
A
3766 3786Right-handed alpha
Helix 92
AK2
A
3787 3801Right-handed alpha
Helix 93
AK3
A
3801 3818Right-handed alpha
Helix 94
AK4
A
3819 3821Right-handed 310
Helix 95
AK5
A
3828 3841Right-handed alpha
Helix 96
AK6
A
3843 3847Right-handed 310
Helix 97
AK7
A
3851 3873Right-handed alpha
Helix 98
AK8
A
3879 3895Right-handed alpha
Helix 99
AK9
A
3901 3910Right-handed alpha
Helix 100
AL1
A
3911 3914Right-handed 310
Helix 101
AL2
A
3928 3939Right-handed alpha
Helix 102
AL3
A
3946 3954Right-handed alpha
Helix 103
AL4
A
3956 3962Right-handed alpha
Helix 104
AL5
A
3965 3969Right-handed 310
Helix 105
AL6
A
3981 3997Right-handed alpha
Helix 106
AL7
A
4000 4013Right-handed alpha
Helix 107
AL8
A
4026 4034Right-handed alpha
Helix 108
AL9
A
4051 4063Right-handed alpha
Helix 109
AM1
A
4073 4091Right-handed alpha
Helix 110
AM2
A
4099 4101Right-handed 310
Helix 111
AM3
A
4102 4115Right-handed alpha
Helix 112
AM4
A
4135 4141Right-handed alpha
Helix 113
AM5
A
4152 4164Right-handed alpha
Helix 114
AM6
A
4165 4170Right-handed alpha
Helix 115
AM7
A
4174 4190Right-handed alpha
Helix 116
AM8
A
4192 4197Right-handed 310
Helix 117
AM9
A
4208 4228Right-handed alpha
Helix 118
AN1
A
4234 4238Right-handed 310
Helix 119
AN2
A
4239 4249Right-handed alpha
Helix 120
AN3
A
4258 4273Right-handed alpha
Helix 121
AN4
A
4275 4279Right-handed 310
Helix 122
AN5
A
4301 4311Right-handed alpha
Helix 123
AN6
A
4317 4321Right-handed 310
Helix 124
AN7
A
4325 4346Right-handed alpha
Helix 125
AN8
A
4376 4391Right-handed alpha
Helix 126
AN9
A
4407 4438Right-handed alpha
Helix 127
AO1
A
4445 4458Right-handed alpha
Helix 128
AO2
A
4475 4500Right-handed alpha
Helix 129
AO3
A
4502 4507Right-handed alpha
Helix 130
AO4
A
4517 4533Right-handed alpha
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There are 20 sheets in PDB entry 8PQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1477 1480first strand
Strand 2
A
1484 1487anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1663 1666first strand
Strand 2
A
1672 1677anti-parallel
Strand 3
A
1683 1691anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1843 1846first strand
Strand 2
A
1857 1861anti-parallel
Strand 3
A
1864 1867anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1901 1905first strand
Strand 2
A
2036 2040parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1927 1931first strand
Strand 2
A
1954 1958parallel
Strand 3
A
2013 2016parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1998 2001first strand
Strand 2
A
2004 2007anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2249 2254first strand
Strand 2
A
2298 2304parallel
Strand 3
A
2339 2344parallel
Strand 4
A
2219 2222parallel
Strand 5
A
2360 2362parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2324 2326first strand
Strand 2
A
2332 2334anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2537 2539first strand
Strand 2
A
2545 2547anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2615 2620first strand
Strand 2
A
2658 2663parallel
Strand 3
A
2706 2711parallel
Strand 4
A
2591 2594parallel
Strand 5
A
2733 2735parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2639 2642first strand
Strand 2
A
2649 2652anti-parallel
Strand 3
A
2699 2703parallel
Strand 4
A
2691 2694anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2872 2873first strand
Strand 2
A
2883 2884anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2957 2959first strand
Strand 2
A
2990 2994parallel
Strand 3
A
3063 3068parallel
Strand 4
A
2933 2936parallel
Strand 5
A
3090 3093parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3610 3613first strand
Strand 2
A
3633 3636parallel
Strand 3
A
3677 3681parallel
Strand 4
A
3587 3590parallel
Strand 5
A
3697 3700parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3654 3656first strand
Strand 2
A
3659 3664anti-parallel
Strand 3
A
3667 3670anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4066 4070first strand
Strand 2
A
4093 4097parallel
Strand 3
A
4123 4129parallel
Strand 4
A
4041 4045parallel
Strand 5
A
4143 4147parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4283 4288first strand
Strand 2
A
4292 4295anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4539 4545first strand
Strand 2
A
4588 4594anti-parallel
Strand 3
A
4557 4560anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4564 4565first strand
Strand 2
A
4583 4584anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4568 4571first strand
Strand 2
A
4574 4577anti-parallel
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