Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PQX entry

There are 6 chains in PDB entry 8PQX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 21	ARG 766
B	ASN 21	ARG 766
C	ASN 21	ARG 766
D	ASN 21	ARG 766
E	ASN 21	ARG 766
F	ASN 21	ARG 766

There are203 helices in PDB entry 8PQX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	49	Right-handed alpha
Helix 2	AA2	A	86	91	Right-handed alpha
Helix 3	AA3	A	135	139	Right-handed 310
Helix 4	AA4	A	191	198	Right-handed alpha
Helix 5	AA5	A	202	206	Right-handed 310
Helix 6	AA6	A	209	226	Right-handed alpha
Helix 7	AA7	A	226	233	Right-handed alpha
Helix 8	AA8	A	250	263	Right-handed alpha
Helix 9	AA9	A	271	276	Right-handed alpha
Helix 10	AB1	A	278	296	Right-handed alpha
Helix 11	AB2	A	305	310	Right-handed alpha
Helix 12	AB3	A	318	338	Right-handed alpha
Helix 13	AB4	A	349	353	Right-handed 310
Helix 14	AB5	A	373	385	Right-handed alpha
Helix 15	AB6	A	391	394	Right-handed 310
Helix 16	AB7	A	395	403	Right-handed alpha
Helix 17	AB8	A	408	431	Right-handed alpha
Helix 18	AB9	A	438	444	Right-handed alpha
Helix 19	AC1	A	448	458	Right-handed alpha
Helix 20	AC2	A	475	479	Right-handed 310
Helix 21	AC3	A	482	499	Right-handed alpha
Helix 22	AC4	A	499	506	Right-handed alpha
Helix 23	AC5	A	523	535	Right-handed alpha
Helix 24	AC6	A	543	553	Right-handed alpha
Helix 25	AC7	A	557	569	Right-handed alpha
Helix 26	AC8	A	580	586	Right-handed alpha
Helix 27	AC9	A	598	610	Right-handed alpha
Helix 28	AD1	A	612	615	Right-handed 310
Helix 29	AD2	A	625	629	Right-handed 310
Helix 30	AD3	A	630	635	Right-handed 310
Helix 31	AD4	A	649	662	Right-handed alpha
Helix 32	AD5	A	671	679	Right-handed alpha
Helix 33	AD6	A	683	714	Right-handed alpha
Helix 34	AD7	A	732	743	Right-handed alpha
Helix 35	AD8	A	748	761	Right-handed alpha
Helix 36	AD9	B	43	47	Right-handed 310
Helix 37	AE1	B	85	93	Right-handed alpha
Helix 38	AE2	B	129	136	Right-handed alpha
Helix 39	AE3	B	202	206	Right-handed 310
Helix 40	AE4	B	209	226	Right-handed alpha
Helix 41	AE5	B	226	233	Right-handed alpha
Helix 42	AE6	B	250	263	Right-handed alpha
Helix 43	AE7	B	271	276	Right-handed alpha
Helix 44	AE8	B	278	296	Right-handed alpha
Helix 45	AE9	B	305	310	Right-handed alpha
Helix 46	AF1	B	318	338	Right-handed alpha
Helix 47	AF2	B	349	353	Right-handed 310
Helix 48	AF3	B	373	385	Right-handed alpha
Helix 49	AF4	B	391	394	Right-handed 310
Helix 50	AF5	B	395	403	Right-handed alpha
Helix 51	AF6	B	408	431	Right-handed alpha
Helix 52	AF7	B	438	444	Right-handed alpha
Helix 53	AF8	B	448	458	Right-handed alpha
Helix 54	AF9	B	475	479	Right-handed 310
Helix 55	AG1	B	482	499	Right-handed alpha
Helix 56	AG2	B	499	506	Right-handed alpha
Helix 57	AG3	B	523	535	Right-handed alpha
Helix 58	AG4	B	543	553	Right-handed alpha
Helix 59	AG5	B	557	569	Right-handed alpha
Helix 60	AG6	B	580	586	Right-handed alpha
Helix 61	AG7	B	598	610	Right-handed alpha
Helix 62	AG8	B	612	615	Right-handed 310
Helix 63	AG9	B	625	629	Right-handed 310
Helix 64	AH1	B	630	635	Right-handed 310
Helix 65	AH2	B	649	662	Right-handed alpha
Helix 66	AH3	B	671	679	Right-handed alpha
Helix 67	AH4	B	683	714	Right-handed alpha
Helix 68	AH5	B	732	743	Right-handed alpha
Helix 69	AH6	B	748	761	Right-handed alpha
Helix 70	AH7	C	43	47	Right-handed 310
Helix 71	AH8	C	85	93	Right-handed alpha
Helix 72	AH9	C	129	136	Right-handed alpha
Helix 73	AI1	C	202	206	Right-handed 310
Helix 74	AI2	C	209	226	Right-handed alpha
Helix 75	AI3	C	226	233	Right-handed alpha
Helix 76	AI4	C	250	263	Right-handed alpha
Helix 77	AI5	C	271	276	Right-handed alpha
Helix 78	AI6	C	278	296	Right-handed alpha
Helix 79	AI7	C	305	310	Right-handed alpha
Helix 80	AI8	C	318	338	Right-handed alpha
Helix 81	AI9	C	349	353	Right-handed 310
Helix 82	AJ1	C	373	385	Right-handed alpha
Helix 83	AJ2	C	391	394	Right-handed 310
Helix 84	AJ3	C	395	403	Right-handed alpha
Helix 85	AJ4	C	408	431	Right-handed alpha
Helix 86	AJ5	C	438	444	Right-handed alpha
Helix 87	AJ6	C	448	458	Right-handed alpha
Helix 88	AJ7	C	475	479	Right-handed 310
Helix 89	AJ8	C	482	499	Right-handed alpha
Helix 90	AJ9	C	499	506	Right-handed alpha
Helix 91	AK1	C	523	535	Right-handed alpha
Helix 92	AK2	C	543	553	Right-handed alpha
Helix 93	AK3	C	557	569	Right-handed alpha
Helix 94	AK4	C	580	586	Right-handed alpha
Helix 95	AK5	C	598	610	Right-handed alpha
Helix 96	AK6	C	612	615	Right-handed 310
Helix 97	AK7	C	625	629	Right-handed 310
Helix 98	AK8	C	630	635	Right-handed 310
Helix 99	AK9	C	649	662	Right-handed alpha
Helix 100	AL1	C	671	679	Right-handed alpha
Helix 101	AL2	C	683	714	Right-handed alpha
Helix 102	AL3	C	732	743	Right-handed alpha
Helix 103	AL4	C	748	761	Right-handed alpha
Helix 104	AL5	D	85	92	Right-handed alpha
Helix 105	AL6	D	129	136	Right-handed alpha
Helix 106	AL7	D	202	206	Right-handed 310
Helix 107	AL8	D	209	226	Right-handed alpha
Helix 108	AL9	D	226	233	Right-handed alpha
Helix 109	AM1	D	250	263	Right-handed alpha
Helix 110	AM2	D	271	276	Right-handed alpha
Helix 111	AM3	D	278	296	Right-handed alpha
Helix 112	AM4	D	305	310	Right-handed alpha
Helix 113	AM5	D	318	338	Right-handed alpha
Helix 114	AM6	D	349	353	Right-handed 310
Helix 115	AM7	D	373	385	Right-handed alpha
Helix 116	AM8	D	391	394	Right-handed 310
Helix 117	AM9	D	395	403	Right-handed alpha
Helix 118	AN1	D	408	431	Right-handed alpha
Helix 119	AN2	D	438	444	Right-handed alpha
Helix 120	AN3	D	448	458	Right-handed alpha
Helix 121	AN4	D	475	479	Right-handed 310
Helix 122	AN5	D	482	499	Right-handed alpha
Helix 123	AN6	D	499	506	Right-handed alpha
Helix 124	AN7	D	523	535	Right-handed alpha
Helix 125	AN8	D	543	553	Right-handed alpha
Helix 126	AN9	D	557	569	Right-handed alpha
Helix 127	AO1	D	580	586	Right-handed alpha
Helix 128	AO2	D	598	610	Right-handed alpha
Helix 129	AO3	D	612	615	Right-handed 310
Helix 130	AO4	D	625	629	Right-handed 310
Helix 131	AO5	D	630	635	Right-handed 310
Helix 132	AO6	D	649	662	Right-handed alpha
Helix 133	AO7	D	671	679	Right-handed alpha
Helix 134	AO8	D	683	714	Right-handed alpha
Helix 135	AO9	D	732	743	Right-handed alpha
Helix 136	AP1	D	748	761	Right-handed alpha
Helix 137	AP2	E	85	91	Right-handed alpha
Helix 138	AP3	E	120	124	Right-handed 310
Helix 139	AP4	E	129	140	Right-handed alpha
Helix 140	AP5	E	202	206	Right-handed 310
Helix 141	AP6	E	209	226	Right-handed alpha
Helix 142	AP7	E	226	233	Right-handed alpha
Helix 143	AP8	E	250	263	Right-handed alpha
Helix 144	AP9	E	271	276	Right-handed alpha
Helix 145	AQ1	E	278	296	Right-handed alpha
Helix 146	AQ2	E	305	310	Right-handed alpha
Helix 147	AQ3	E	318	338	Right-handed alpha
Helix 148	AQ4	E	349	353	Right-handed 310
Helix 149	AQ5	E	373	385	Right-handed alpha
Helix 150	AQ6	E	391	394	Right-handed 310
Helix 151	AQ7	E	395	403	Right-handed alpha
Helix 152	AQ8	E	408	431	Right-handed alpha
Helix 153	AQ9	E	438	444	Right-handed alpha
Helix 154	AR1	E	448	458	Right-handed alpha
Helix 155	AR2	E	475	479	Right-handed 310
Helix 156	AR3	E	482	499	Right-handed alpha
Helix 157	AR4	E	499	506	Right-handed alpha
Helix 158	AR5	E	523	535	Right-handed alpha
Helix 159	AR6	E	543	553	Right-handed alpha
Helix 160	AR7	E	557	569	Right-handed alpha
Helix 161	AR8	E	580	586	Right-handed alpha
Helix 162	AR9	E	598	610	Right-handed alpha
Helix 163	AS1	E	612	615	Right-handed 310
Helix 164	AS2	E	625	629	Right-handed 310
Helix 165	AS3	E	630	635	Right-handed 310
Helix 166	AS4	E	649	662	Right-handed alpha
Helix 167	AS5	E	671	679	Right-handed alpha
Helix 168	AS6	E	683	714	Right-handed alpha
Helix 169	AS7	E	732	743	Right-handed alpha
Helix 170	AS8	E	748	761	Right-handed alpha
Helix 171	AS9	F	85	92	Right-handed alpha
Helix 172	AT1	F	129	140	Right-handed alpha
Helix 173	AT2	F	202	206	Right-handed 310
Helix 174	AT3	F	209	226	Right-handed alpha
Helix 175	AT4	F	226	233	Right-handed alpha
Helix 176	AT5	F	250	263	Right-handed alpha
Helix 177	AT6	F	271	276	Right-handed alpha
Helix 178	AT7	F	278	296	Right-handed alpha
Helix 179	AT8	F	305	310	Right-handed alpha
Helix 180	AT9	F	318	338	Right-handed alpha
Helix 181	AU1	F	349	353	Right-handed 310
Helix 182	AU2	F	373	385	Right-handed alpha
Helix 183	AU3	F	391	394	Right-handed 310
Helix 184	AU4	F	395	403	Right-handed alpha
Helix 185	AU5	F	408	431	Right-handed alpha
Helix 186	AU6	F	438	444	Right-handed alpha
Helix 187	AU7	F	448	458	Right-handed alpha
Helix 188	AU8	F	475	479	Right-handed 310
Helix 189	AU9	F	482	499	Right-handed alpha
Helix 190	AV1	F	499	506	Right-handed alpha
Helix 191	AV2	F	523	535	Right-handed alpha
Helix 192	AV3	F	543	553	Right-handed alpha
Helix 193	AV4	F	557	569	Right-handed alpha
Helix 194	AV5	F	580	586	Right-handed alpha
Helix 195	AV6	F	598	610	Right-handed alpha
Helix 196	AV7	F	612	615	Right-handed 310
Helix 197	AV8	F	625	629	Right-handed 310
Helix 198	AV9	F	630	635	Right-handed 310
Helix 199	AW1	F	649	662	Right-handed alpha
Helix 200	AW2	F	671	679	Right-handed alpha
Helix 201	AW3	F	683	714	Right-handed alpha
Helix 202	AW4	F	732	743	Right-handed alpha
Helix 203	AW5	F	748	761	Right-handed alpha

There are 35 sheets in PDB entry 8PQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	99	104	anti-parallel
Strand 3	A	26	29	anti-parallel
Strand 4	A	81	83	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	270	first strand
Strand 2	A	299	304	parallel
Strand 3	A	341	347	parallel
Strand 4	A	240	244	parallel
Strand 5	A	365	368	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	572	576	parallel
Strand 3	A	617	623	parallel
Strand 4	A	513	517	parallel
Strand 5	A	641	644	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	99	100	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	69	first strand
Strand 2	B	57	61	anti-parallel
Strand 3	B	103	104	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	159	165	anti-parallel
Strand 3	B	153	156	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	173	174	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	299	304	parallel
Strand 3	B	341	347	parallel
Strand 4	B	240	244	parallel
Strand 5	B	365	368	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	572	576	parallel
Strand 3	B	617	623	parallel
Strand 4	B	513	517	parallel
Strand 5	B	641	644	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	99	100	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	69	first strand
Strand 2	C	57	61	anti-parallel
Strand 3	C	103	104	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	118	first strand
Strand 2	C	159	165	anti-parallel
Strand 3	C	153	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	173	174	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	270	first strand
Strand 2	C	299	304	parallel
Strand 3	C	341	347	parallel
Strand 4	C	240	244	parallel
Strand 5	C	365	368	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	538	542	first strand
Strand 2	C	572	576	parallel
Strand 3	C	617	623	parallel
Strand 4	C	513	517	parallel
Strand 5	C	641	644	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	99	100	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	70	first strand
Strand 2	D	56	61	anti-parallel
Strand 3	D	102	104	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	111	first strand
Strand 2	D	173	176	parallel
Strand 3	D	146	147	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	159	162	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	270	first strand
Strand 2	D	299	304	parallel
Strand 3	D	341	347	parallel
Strand 4	D	240	244	parallel
Strand 5	D	365	368	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	542	first strand
Strand 2	D	572	576	parallel
Strand 3	D	617	623	parallel
Strand 4	D	513	517	parallel
Strand 5	D	641	644	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	27	first strand
Strand 2	E	99	100	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	70	first strand
Strand 2	E	56	61	anti-parallel
Strand 3	E	102	104	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	110	111	first strand
Strand 2	E	173	176	parallel
Strand 3	E	146	147	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	118	first strand
Strand 2	E	159	165	anti-parallel
Strand 3	E	153	156	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	265	270	first strand
Strand 2	E	299	304	parallel
Strand 3	E	341	347	parallel
Strand 4	E	240	244	parallel
Strand 5	E	365	368	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	538	542	first strand
Strand 2	E	572	576	parallel
Strand 3	E	617	623	parallel
Strand 4	E	513	517	parallel
Strand 5	E	641	644	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	27	first strand
Strand 2	F	99	100	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	42	first strand
Strand 2	F	73	74	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	69	first strand
Strand 2	F	57	61	anti-parallel
Strand 3	F	102	104	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	110	111	first strand
Strand 2	F	173	176	parallel
Strand 3	F	146	147	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	117	first strand
Strand 2	F	164	165	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	156	first strand
Strand 2	F	159	162	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	270	first strand
Strand 2	F	299	304	parallel
Strand 3	F	341	347	parallel
Strand 4	F	240	244	parallel
Strand 5	F	365	368	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	538	542	first strand
Strand 2	F	572	576	parallel
Strand 3	F	617	623	parallel
Strand 4	F	513	517	parallel
Strand 5	F	641	644	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PQX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PQX