Analysis of interatomic Contacts of Structural Units in PDB entry:
8PR2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PR2 entry

There are 6 chains in PDB entry 8PR2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASN 65	GLU 170
C	ASN 65	GLU 170
f	GLN 246	VAL 1040
h	LYS 238	THR 608
j	VAL 349	GLN 373
m	LYS 177	ASN 766

There are 64 helices in PDB entry 8PR2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	65	170	Right-handed alpha
Helix 2	AA2	C	66	170	Right-handed alpha
Helix 3	AA3	f	247	261	Right-handed alpha
Helix 4	AA4	f	270	293	Right-handed alpha
Helix 5	AA5	f	294	307	Right-handed alpha
Helix 6	AA6	f	309	319	Right-handed alpha
Helix 7	AA7	f	321	332	Right-handed alpha
Helix 8	AA8	f	332	337	Right-handed alpha
Helix 9	AA9	f	340	346	Right-handed alpha
Helix 10	AB1	f	349	364	Right-handed alpha
Helix 11	AB2	f	365	368	Right-handed 310
Helix 12	AB3	f	373	400	Right-handed alpha
Helix 13	AB4	f	405	439	Right-handed alpha
Helix 14	AB5	f	455	483	Right-handed alpha
Helix 15	AB6	f	513	533	Right-handed alpha
Helix 16	AB7	f	539	574	Right-handed alpha
Helix 17	AB8	f	577	586	Right-handed alpha
Helix 18	AB9	f	588	592	Right-handed 310
Helix 19	AC1	f	596	604	Right-handed alpha
Helix 20	AC2	f	604	625	Right-handed alpha
Helix 21	AC3	f	630	639	Right-handed alpha
Helix 22	AC4	f	642	670	Right-handed alpha
Helix 23	AC5	f	676	693	Right-handed alpha
Helix 24	AC6	f	695	710	Right-handed alpha
Helix 25	AC7	f	740	754	Right-handed alpha
Helix 26	AC8	f	761	798	Right-handed alpha
Helix 27	AC9	f	799	802	Right-handed 310
Helix 28	AD1	f	805	820	Right-handed alpha
Helix 29	AD2	f	828	863	Right-handed alpha
Helix 30	AD3	f	870	891	Right-handed alpha
Helix 31	AD4	f	895	923	Right-handed alpha
Helix 32	AD5	f	986	995	Right-handed alpha
Helix 33	AD6	f	1013	1018	Right-handed alpha
Helix 34	AD7	f	1030	1039	Right-handed alpha
Helix 35	AD8	h	574	579	Right-handed alpha
Helix 36	AD9	h	583	608	Right-handed alpha
Helix 37	AE1	j	358	373	Right-handed alpha
Helix 38	AE2	m	178	198	Right-handed alpha
Helix 39	AE3	m	242	261	Right-handed alpha
Helix 40	AE4	m	270	293	Right-handed alpha
Helix 41	AE5	m	294	307	Right-handed alpha
Helix 42	AE6	m	309	318	Right-handed alpha
Helix 43	AE7	m	321	337	Right-handed alpha
Helix 44	AE8	m	340	347	Right-handed alpha
Helix 45	AE9	m	349	364	Right-handed alpha
Helix 46	AF1	m	365	369	Right-handed 310
Helix 47	AF2	m	373	400	Right-handed alpha
Helix 48	AF3	m	401	404	Right-handed 310
Helix 49	AF4	m	405	440	Right-handed alpha
Helix 50	AF5	m	456	484	Right-handed alpha
Helix 51	AF6	m	514	532	Right-handed alpha
Helix 52	AF7	m	539	569	Right-handed alpha
Helix 53	AF8	m	570	572	Right-handed 310
Helix 54	AF9	m	577	588	Right-handed alpha
Helix 55	AG1	m	589	593	Right-handed 310
Helix 56	AG2	m	594	601	Right-handed alpha
Helix 57	AG3	m	602	623	Right-handed alpha
Helix 58	AG4	m	630	639	Right-handed alpha
Helix 59	AG5	m	642	670	Right-handed alpha
Helix 60	AG6	m	672	676	Right-handed 310
Helix 61	AG7	m	678	692	Right-handed alpha
Helix 62	AG8	m	695	707	Right-handed alpha
Helix 63	AG9	m	746	754	Right-handed alpha
Helix 64	AH1	m	761	766	Right-handed alpha

There are 8 sheets in PDB entry 8PR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	718	723	first strand
Strand 2	f	732	737	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	239	245	first strand
Strand 2	h	568	573	anti-parallel
Strand 3	h	558	563	anti-parallel
Strand 4	h	547	552	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	256	261	first strand
Strand 2	h	268	273	anti-parallel
Strand 3	h	285	291	anti-parallel
Strand 4	h	301	305	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	309	314	first strand
Strand 2	h	321	326	anti-parallel
Strand 3	h	331	335	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	358	365	first strand
Strand 2	h	370	376	anti-parallel
Strand 3	h	380	384	anti-parallel
Strand 4	h	394	397	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	408	412	first strand
Strand 2	h	420	425	anti-parallel
Strand 3	h	430	434	anti-parallel
Strand 4	h	441	442	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	453	458	first strand
Strand 2	h	470	475	anti-parallel
Strand 3	h	479	484	anti-parallel
Strand 4	h	492	495	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	501	506	first strand
Strand 2	h	513	518	anti-parallel
Strand 3	h	522	527	anti-parallel
Strand 4	h	537	540	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PR2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PR2