Analysis of interatomic Contacts of Structural Units in PDB entry:
8PR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PR4 entry

There are 6 chains in PDB entry 8PR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	GLU 12	LEU 390
U	SER 8	LYS 182
W	MET 1	LEU 179
Y	ALA 2	PRO 464
X	ALA 374	TRP 551
x	ARG 410	TRP 551

There are 34 helices in PDB entry 8PR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	60	79	Right-handed alpha
Helix 2	AA2	J	98	112	Right-handed alpha
Helix 3	AA3	J	124	129	Right-handed alpha
Helix 4	AA4	J	158	161	Right-handed 310
Helix 5	AA5	J	167	182	Right-handed alpha
Helix 6	AA6	J	203	214	Right-handed alpha
Helix 7	AA7	J	219	232	Right-handed alpha
Helix 8	AA8	J	261	266	Right-handed alpha
Helix 9	AA9	J	267	270	Right-handed 310
Helix 10	AB1	J	281	289	Right-handed alpha
Helix 11	AB2	J	296	301	Right-handed alpha
Helix 12	AB3	J	314	327	Right-handed alpha
Helix 13	AB4	J	329	337	Right-handed alpha
Helix 14	AB5	J	352	363	Right-handed alpha
Helix 15	AB6	J	364	369	Right-handed alpha
Helix 16	AB7	J	375	381	Right-handed alpha
Helix 17	AB8	U	65	70	Right-handed alpha
Helix 18	AB9	U	161	168	Right-handed alpha
Helix 19	AC1	W	164	175	Right-handed alpha
Helix 20	AC2	Y	23	25	Right-handed 310
Helix 21	AC3	Y	59	66	Right-handed alpha
Helix 22	AC4	Y	138	140	Right-handed 310
Helix 23	AC5	Y	141	170	Right-handed alpha
Helix 24	AC6	Y	251	256	Right-handed alpha
Helix 25	AC7	Y	265	269	Right-handed 310
Helix 26	AC8	Y	308	312	Right-handed 310
Helix 27	AC9	Y	448	452	Right-handed 310
Helix 28	AD1	X	382	387	Right-handed alpha
Helix 29	AD2	X	391	396	Right-handed alpha
Helix 30	AD3	X	412	467	Right-handed alpha
Helix 31	AD4	X	519	549	Right-handed alpha
Helix 32	AD5	x	411	467	Right-handed alpha
Helix 33	AD6	x	519	540	Right-handed alpha
Helix 34	AD7	x	540	551	Right-handed alpha

There are 24 sheets in PDB entry 8PR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	37	40	first strand
Strand 2	J	24	29	anti-parallel
Strand 3	J	16	19	anti-parallel
Strand 4	J	89	93	parallel
Strand 5	J	117	122	parallel
Strand 6	J	373	374	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	43	first strand
Strand 2	J	52	53	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	135	141	first strand
Strand 2	J	146	152	anti-parallel
Strand 3	J	155	156	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	135	141	first strand
Strand 2	J	146	152	anti-parallel
Strand 3	J	162	164	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	186	first strand
Strand 2	J	254	258	anti-parallel
Strand 3	J	246	250	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	9	11	first strand
Strand 2	U	27	29	parallel
Strand 3	U	48	50	parallel
Strand 4	U	82	84	parallel
Strand 5	U	100	101	parallel
Strand 6	U	117	119	parallel
Strand 7	U	135	137	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	16	17	first strand
Strand 2	U	34	35	parallel
Strand 3	U	55	56	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	23	24	first strand
Strand 2	U	41	42	parallel
Strand 3	U	61	63	parallel
Strand 4	U	95	96	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	106	107	first strand
Strand 2	U	124	125	parallel
Strand 3	U	142	143	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	112	113	first strand
Strand 2	U	130	131	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	6	8	first strand
Strand 2	W	176	178	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	13	15	first strand
Strand 2	W	21	23	anti-parallel
Strand 3	W	41	42	parallel
Strand 4	W	62	63	parallel
Strand 5	W	92	93	parallel
Strand 6	W	109	110	parallel
Strand 7	W	127	128	parallel
Strand 8	W	144	147	parallel
Strand 9	W	152	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	28	29	first strand
Strand 2	W	48	49	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	35	36	first strand
Strand 2	W	56	57	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	68	69	first strand
Strand 2	W	98	99	parallel
Strand 3	W	115	116	parallel
Strand 4	W	133	134	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	73	74	first strand
Strand 2	W	81	82	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	121	122	first strand
Strand 2	W	139	140	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	21	22	first strand
Strand 2	Y	10	13	anti-parallel
Strand 3	Y	455	461	anti-parallel
Strand 4	Y	423	430	anti-parallel
Strand 5	Y	340	344	anti-parallel
Strand 6	Y	370	373	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	27	30	first strand
Strand 2	Y	35	38	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	43	44	first strand
Strand 2	Y	282	283	anti-parallel
Strand 3	Y	290	294	anti-parallel
Strand 4	Y	303	306	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	57	58	first strand
Strand 2	Y	48	50	anti-parallel
Strand 3	Y	277	279	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	69	75	first strand
Strand 2	Y	272	275	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	84	86	first strand
Strand 2	Y	108	110	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	316	320	first strand
Strand 2	Y	328	335	anti-parallel
Strand 3	Y	406	413	anti-parallel
Strand 4	Y	399	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PR4