Analysis of interatomic Contacts of Structural Units in PDB entry:
8PR7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PR7 entry

There are 6 chains in PDB entry 8PR7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 124	LYS 389
B	VAL 3	THR 93
C	PRO 468	PHE 531
D	ARG 126	SER 388
E	VAL 3	THR 93
F	GLU 506	LYS 527

There are 30 helices in PDB entry 8PR7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	131	Right-handed 310
Helix 2	AA2	A	166	172	Right-handed alpha
Helix 3	AA3	A	174	186	Right-handed alpha
Helix 4	AA4	A	217	226	Right-handed alpha
Helix 5	AA5	A	229	250	Right-handed alpha
Helix 6	AA6	A	258	260	Right-handed 310
Helix 7	AA7	A	291	296	Right-handed 310
Helix 8	AA8	A	297	302	Right-handed alpha
Helix 9	AA9	A	308	325	Right-handed alpha
Helix 10	AB1	A	333	343	Right-handed alpha
Helix 11	AB2	A	353	364	Right-handed alpha
Helix 12	AB3	A	367	371	Right-handed 310
Helix 13	AB4	A	373	379	Right-handed alpha
Helix 14	AB5	A	380	387	Right-handed alpha
Helix 15	AB6	C	501	507	Right-handed alpha
Helix 16	AB7	C	511	529	Right-handed alpha
Helix 17	AB8	D	129	131	Right-handed 310
Helix 18	AB9	D	166	173	Right-handed alpha
Helix 19	AC1	D	174	186	Right-handed alpha
Helix 20	AC2	D	217	226	Right-handed alpha
Helix 21	AC3	D	229	250	Right-handed alpha
Helix 22	AC4	D	258	260	Right-handed 310
Helix 23	AC5	D	297	302	Right-handed alpha
Helix 24	AC6	D	308	325	Right-handed alpha
Helix 25	AC7	D	333	343	Right-handed alpha
Helix 26	AC8	D	353	364	Right-handed alpha
Helix 27	AC9	D	367	371	Right-handed 310
Helix 28	AD1	D	373	379	Right-handed alpha
Helix 29	AD2	D	380	387	Right-handed alpha
Helix 30	AD3	F	511	526	Right-handed alpha

There are 11 sheets in PDB entry 8PR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	141	first strand
Strand 2	A	146	152	anti-parallel
Strand 3	A	158	165	anti-parallel
Strand 4	A	205	211	anti-parallel
Strand 5	A	196	201	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	264	first strand
Strand 2	A	270	272	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	20	24	anti-parallel
Strand 3	B	58	61	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	33	40	anti-parallel
Strand 3	B	70	78	anti-parallel
Strand 4	B	82	83	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	53	first strand
Strand 2	B	33	40	anti-parallel
Strand 3	B	70	78	anti-parallel
Strand 4	B	87	91	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	474	first strand
Strand 2	C	480	482	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	141	first strand
Strand 2	D	146	152	anti-parallel
Strand 3	D	158	165	anti-parallel
Strand 4	D	205	210	anti-parallel
Strand 5	D	196	201	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	270	272	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	16	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	58	62	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	53	first strand
Strand 2	E	33	40	anti-parallel
Strand 3	E	68	78	anti-parallel
Strand 4	E	82	83	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	53	first strand
Strand 2	E	33	40	anti-parallel
Strand 3	E	68	78	anti-parallel
Strand 4	E	87	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PR7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PR7