Analysis of interatomic Contacts of Structural Units in PDB entry:
8PRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PRU entry

There are 6 chains in PDB entry 8PRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 340
B
 MET 1MET 340
C
 MET 1MET 340
D
 MET 1MET 340
E
 MET 1MET 340
F
 MET 1MET 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 8PRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 10Right-handed 310
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
25 38Right-handed alpha
Helix 4
AA4
A
50 59Right-handed alpha
Helix 5
AA5
A
65 72Right-handed alpha
Helix 6
AA6
A
81 93Right-handed alpha
Helix 7
AA7
A
108 113Right-handed alpha
Helix 8
AA8
A
174 186Right-handed alpha
Helix 9
AA9
A
197 212Right-handed alpha
Helix 10
AB1
A
214 231Right-handed alpha
Helix 11
AB2
A
234 243Right-handed alpha
Helix 12
AB3
A
245 265Right-handed alpha
Helix 13
AB4
A
266 281Right-handed alpha
Helix 14
AB5
A
282 299Right-handed alpha
Helix 15
AB6
A
300 312Right-handed alpha
Helix 16
AB7
A
314 326Right-handed alpha
Helix 17
AB8
A
327 340Right-handed alpha
Helix 18
AB9
B
5 10Right-handed 310
Helix 19
AC1
B
11 16Right-handed alpha
Helix 20
AC2
B
25 38Right-handed alpha
Helix 21
AC3
B
50 59Right-handed alpha
Helix 22
AC4
B
65 72Right-handed alpha
Helix 23
AC5
B
81 93Right-handed alpha
Helix 24
AC6
B
108 113Right-handed alpha
Helix 25
AC7
B
174 186Right-handed alpha
Helix 26
AC8
B
197 212Right-handed alpha
Helix 27
AC9
B
214 231Right-handed alpha
Helix 28
AD1
B
234 243Right-handed alpha
Helix 29
AD2
B
245 265Right-handed alpha
Helix 30
AD3
B
266 281Right-handed alpha
Helix 31
AD4
B
282 299Right-handed alpha
Helix 32
AD5
B
300 312Right-handed alpha
Helix 33
AD6
B
314 326Right-handed alpha
Helix 34
AD7
B
327 340Right-handed alpha
Helix 35
AD8
C
5 10Right-handed 310
Helix 36
AD9
C
11 16Right-handed alpha
Helix 37
AE1
C
25 38Right-handed alpha
Helix 38
AE2
C
50 59Right-handed alpha
Helix 39
AE3
C
65 72Right-handed alpha
Helix 40
AE4
C
81 93Right-handed alpha
Helix 41
AE5
C
108 113Right-handed alpha
Helix 42
AE6
C
174 186Right-handed alpha
Helix 43
AE7
C
197 212Right-handed alpha
Helix 44
AE8
C
214 231Right-handed alpha
Helix 45
AE9
C
234 243Right-handed alpha
Helix 46
AF1
C
245 265Right-handed alpha
Helix 47
AF2
C
266 281Right-handed alpha
Helix 48
AF3
C
282 299Right-handed alpha
Helix 49
AF4
C
300 312Right-handed alpha
Helix 50
AF5
C
314 326Right-handed alpha
Helix 51
AF6
C
327 340Right-handed alpha
Helix 52
AF7
D
5 10Right-handed 310
Helix 53
AF8
D
11 16Right-handed alpha
Helix 54
AF9
D
25 38Right-handed alpha
Helix 55
AG1
D
50 59Right-handed alpha
Helix 56
AG2
D
65 72Right-handed alpha
Helix 57
AG3
D
81 93Right-handed alpha
Helix 58
AG4
D
108 113Right-handed alpha
Helix 59
AG5
D
174 186Right-handed alpha
Helix 60
AG6
D
197 212Right-handed alpha
Helix 61
AG7
D
214 231Right-handed alpha
Helix 62
AG8
D
234 243Right-handed alpha
Helix 63
AG9
D
245 265Right-handed alpha
Helix 64
AH1
D
266 281Right-handed alpha
Helix 65
AH2
D
282 299Right-handed alpha
Helix 66
AH3
D
300 311Right-handed alpha
Helix 67
AH4
D
314 326Right-handed alpha
Helix 68
AH5
D
327 340Right-handed alpha
Helix 69
AH6
E
5 10Right-handed 310
Helix 70
AH7
E
11 16Right-handed alpha
Helix 71
AH8
E
25 38Right-handed alpha
Helix 72
AH9
E
50 59Right-handed alpha
Helix 73
AI1
E
65 72Right-handed alpha
Helix 74
AI2
E
81 83Right-handed 310
Helix 75
AI3
E
84 93Right-handed alpha
Helix 76
AI4
E
108 113Right-handed alpha
Helix 77
AI5
E
174 186Right-handed alpha
Helix 78
AI6
E
197 212Right-handed alpha
Helix 79
AI7
E
214 231Right-handed alpha
Helix 80
AI8
E
234 243Right-handed alpha
Helix 81
AI9
E
245 265Right-handed alpha
Helix 82
AJ1
E
266 281Right-handed alpha
Helix 83
AJ2
E
282 299Right-handed alpha
Helix 84
AJ3
E
300 312Right-handed alpha
Helix 85
AJ4
E
314 326Right-handed alpha
Helix 86
AJ5
E
327 340Right-handed alpha
Helix 87
AJ6
F
5 10Right-handed 310
Helix 88
AJ7
F
11 16Right-handed alpha
Helix 89
AJ8
F
25 38Right-handed alpha
Helix 90
AJ9
F
50 59Right-handed alpha
Helix 91
AK1
F
65 72Right-handed alpha
Helix 92
AK2
F
81 93Right-handed alpha
Helix 93
AK3
F
108 113Right-handed alpha
Helix 94
AK4
F
174 186Right-handed alpha
Helix 95
AK5
F
197 212Right-handed alpha
Helix 96
AK6
F
214 231Right-handed alpha
Helix 97
AK7
F
234 243Right-handed alpha
Helix 98
AK8
F
245 265Right-handed alpha
Helix 99
AK9
F
266 281Right-handed alpha
Helix 100
AL1
F
282 299Right-handed alpha
Helix 101
AL2
F
300 312Right-handed alpha
Helix 102
AL3
F
314 326Right-handed alpha
Helix 103
AL4
F
327 340Right-handed alpha
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There are 6 sheets in PDB entry 8PRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
193 195anti-parallel
Strand 3
A
163 169parallel
Strand 4
A
123 129anti-parallel
Strand 5
A
102 105parallel
Strand 6
A
75 78parallel
Strand 7
A
18 22parallel
Strand 8
A
41 45parallel
Strand 9
A
62 64parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
193 195anti-parallel
Strand 3
B
163 169parallel
Strand 4
B
123 129anti-parallel
Strand 5
B
102 105parallel
Strand 6
B
75 78parallel
Strand 7
B
18 22parallel
Strand 8
B
41 45parallel
Strand 9
B
62 64parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 4first strand
Strand 2
C
193 195anti-parallel
Strand 3
C
163 169parallel
Strand 4
C
123 129anti-parallel
Strand 5
C
102 105parallel
Strand 6
C
75 78parallel
Strand 7
C
18 22parallel
Strand 8
C
41 45parallel
Strand 9
C
62 64parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 4first strand
Strand 2
D
193 195anti-parallel
Strand 3
D
163 169parallel
Strand 4
D
123 129anti-parallel
Strand 5
D
102 105parallel
Strand 6
D
75 78parallel
Strand 7
D
18 22parallel
Strand 8
D
41 45parallel
Strand 9
D
63 64parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 4first strand
Strand 2
E
193 195anti-parallel
Strand 3
E
163 169parallel
Strand 4
E
123 129anti-parallel
Strand 5
E
102 105parallel
Strand 6
E
75 78parallel
Strand 7
E
18 22parallel
Strand 8
E
41 45parallel
Strand 9
E
62 64parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 4first strand
Strand 2
F
193 195anti-parallel
Strand 3
F
163 169parallel
Strand 4
F
123 129anti-parallel
Strand 5
F
102 105parallel
Strand 6
F
75 78parallel
Strand 7
F
18 22parallel
Strand 8
F
41 45parallel
Strand 9
F
62 64parallel
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