Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PS4 entry

There are 4 chains in PDB entry 8PS4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 408
B	MET 1	GLY 408
C	MET 1	GLY 408
D	MET 1	VAL 12

There are 50 helices in PDB entry 8PS4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	34	Right-handed alpha
Helix 2	AA2	A	98	102	Right-handed alpha
Helix 3	AA3	A	110	118	Right-handed alpha
Helix 4	AA4	A	135	146	Right-handed alpha
Helix 5	AA5	A	150	165	Right-handed alpha
Helix 6	AA6	A	173	185	Right-handed alpha
Helix 7	AA7	A	196	221	Right-handed alpha
Helix 8	AA8	A	225	241	Right-handed alpha
Helix 9	AA9	A	305	337	Right-handed alpha
Helix 10	AB1	A	369	382	Right-handed alpha
Helix 11	AB2	A	391	408	Right-handed alpha
Helix 12	AB3	B	23	34	Right-handed alpha
Helix 13	AB4	B	79	84	Right-handed 310
Helix 14	AB5	B	98	102	Right-handed alpha
Helix 15	AB6	B	110	118	Right-handed alpha
Helix 16	AB7	B	135	146	Right-handed alpha
Helix 17	AB8	B	148	170	Right-handed alpha
Helix 18	AB9	B	171	189	Right-handed alpha
Helix 19	AC1	B	195	221	Right-handed alpha
Helix 20	AC2	B	225	241	Right-handed alpha
Helix 21	AC3	B	305	337	Right-handed alpha
Helix 22	AC4	B	369	383	Right-handed alpha
Helix 23	AC5	B	391	408	Right-handed alpha
Helix 24	AC6	C	22	33	Right-handed alpha
Helix 25	AC7	C	98	103	Right-handed alpha
Helix 26	AC8	C	104	108	Right-handed 310
Helix 27	AC9	C	109	118	Right-handed alpha
Helix 28	AD1	C	135	146	Right-handed alpha
Helix 29	AD2	C	148	164	Right-handed alpha
Helix 30	AD3	C	164	169	Right-handed alpha
Helix 31	AD4	C	173	185	Right-handed alpha
Helix 32	AD5	C	189	193	Right-handed 310
Helix 33	AD6	C	196	220	Right-handed alpha
Helix 34	AD7	C	225	241	Right-handed alpha
Helix 35	AD8	C	305	338	Right-handed alpha
Helix 36	AD9	C	369	381	Right-handed alpha
Helix 37	AE1	C	391	408	Right-handed alpha
Helix 38	AE2	D	22	34	Right-handed alpha
Helix 39	AE3	D	98	102	Right-handed alpha
Helix 40	AE4	D	110	118	Right-handed alpha
Helix 41	AE5	D	135	146	Right-handed alpha
Helix 42	AE6	D	148	168	Right-handed alpha
Helix 43	AE7	D	171	189	Right-handed alpha
Helix 44	AE8	D	195	220	Right-handed alpha
Helix 45	AE9	D	225	241	Right-handed alpha
Helix 46	AF1	D	297	301	Right-handed 310
Helix 47	AF2	D	305	337	Right-handed alpha
Helix 48	AF3	D	362	366	Right-handed 310
Helix 49	AF4	D	369	382	Right-handed alpha
Helix 50	AF5	D	391	408	Right-handed alpha

There are 17 sheets in PDB entry 8PS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	10	15	anti-parallel
Strand 3	A	64	67	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	42	44	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	89	92	anti-parallel
Strand 3	A	124	126	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	108	109	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	255	first strand
Strand 2	A	264	274	anti-parallel
Strand 3	A	279	284	anti-parallel
Strand 4	A	354	357	parallel
Strand 5	A	388	390	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	10	15	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	75	78	anti-parallel
Strand 5	B	89	92	anti-parallel
Strand 6	B	124	126	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	42	45	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	108	109	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	255	first strand
Strand 2	B	264	273	anti-parallel
Strand 3	B	279	285	anti-parallel
Strand 4	B	354	358	parallel
Strand 5	B	388	390	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	10	15	anti-parallel
Strand 3	C	64	72	anti-parallel
Strand 4	C	49	51	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	10	15	anti-parallel
Strand 3	C	64	72	anti-parallel
Strand 4	C	75	78	anti-parallel
Strand 5	C	89	92	anti-parallel
Strand 6	C	124	126	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	42	44	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	255	first strand
Strand 2	C	264	274	anti-parallel
Strand 3	C	278	284	anti-parallel
Strand 4	C	348	357	parallel
Strand 5	C	388	390	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	10	15	anti-parallel
Strand 3	D	64	72	anti-parallel
Strand 4	D	75	78	anti-parallel
Strand 5	D	89	92	anti-parallel
Strand 6	D	124	126	parallel
Strand 7	D	133	134	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	42	45	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	104	first strand
Strand 2	D	108	109	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	255	first strand
Strand 2	D	264	273	anti-parallel
Strand 3	D	279	285	anti-parallel
Strand 4	D	354	358	parallel
Strand 5	D	386	390	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PS4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS4