Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PS5 entry

There are 6 chains in PDB entry 8PS5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 408
B	MET 1	GLY 408
C	MET 1	GLY 408
D	MET 1	GLY 408
E	C 1	G 40
F	C 1	G 40

There are 54 helices in PDB entry 8PS5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	33	Right-handed alpha
Helix 2	AA2	A	98	103	Right-handed alpha
Helix 3	AA3	A	109	118	Right-handed alpha
Helix 4	AA4	A	135	146	Right-handed alpha
Helix 5	AA5	A	148	164	Right-handed alpha
Helix 6	AA6	A	173	183	Right-handed alpha
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	196	221	Right-handed alpha
Helix 9	AA9	A	225	234	Right-handed alpha
Helix 10	AB1	A	236	241	Right-handed alpha
Helix 11	AB2	A	305	326	Right-handed alpha
Helix 12	AB3	A	326	337	Right-handed alpha
Helix 13	AB4	A	362	367	Right-handed alpha
Helix 14	AB5	A	369	381	Right-handed alpha
Helix 15	AB6	A	391	408	Right-handed alpha
Helix 16	AB7	B	23	34	Right-handed alpha
Helix 17	AB8	B	98	103	Right-handed alpha
Helix 18	AB9	B	109	118	Right-handed alpha
Helix 19	AC1	B	135	145	Right-handed alpha
Helix 20	AC2	B	148	168	Right-handed alpha
Helix 21	AC3	B	172	189	Right-handed alpha
Helix 22	AC4	B	195	221	Right-handed alpha
Helix 23	AC5	B	225	234	Right-handed alpha
Helix 24	AC6	B	236	241	Right-handed alpha
Helix 25	AC7	B	305	326	Right-handed alpha
Helix 26	AC8	B	326	337	Right-handed alpha
Helix 27	AC9	B	369	381	Right-handed alpha
Helix 28	AD1	B	391	408	Right-handed alpha
Helix 29	AD2	C	22	33	Right-handed alpha
Helix 30	AD3	C	98	103	Right-handed alpha
Helix 31	AD4	C	104	108	Right-handed 310
Helix 32	AD5	C	109	118	Right-handed alpha
Helix 33	AD6	C	135	146	Right-handed alpha
Helix 34	AD7	C	148	164	Right-handed alpha
Helix 35	AD8	C	173	183	Right-handed alpha
Helix 36	AD9	C	196	220	Right-handed alpha
Helix 37	AE1	C	221	224	Right-handed 310
Helix 38	AE2	C	225	241	Right-handed alpha
Helix 39	AE3	C	305	324	Right-handed alpha
Helix 40	AE4	C	326	337	Right-handed alpha
Helix 41	AE5	C	369	381	Right-handed alpha
Helix 42	AE6	C	391	408	Right-handed alpha
Helix 43	AE7	D	22	34	Right-handed alpha
Helix 44	AE8	D	98	103	Right-handed alpha
Helix 45	AE9	D	109	118	Right-handed alpha
Helix 46	AF1	D	135	145	Right-handed alpha
Helix 47	AF2	D	148	168	Right-handed alpha
Helix 48	AF3	D	171	189	Right-handed alpha
Helix 49	AF4	D	195	221	Right-handed alpha
Helix 50	AF5	D	225	234	Right-handed alpha
Helix 51	AF6	D	236	241	Right-handed alpha
Helix 52	AF7	D	305	337	Right-handed alpha
Helix 53	AF8	D	369	381	Right-handed alpha
Helix 54	AF9	D	391	408	Right-handed alpha

There are 14 sheets in PDB entry 8PS5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	10	15	anti-parallel
Strand 3	A	64	72	anti-parallel
Strand 4	A	75	78	anti-parallel
Strand 5	A	89	92	anti-parallel
Strand 6	A	124	126	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	42	45	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	255	first strand
Strand 2	A	264	274	anti-parallel
Strand 3	A	279	284	anti-parallel
Strand 4	A	354	357	parallel
Strand 5	A	386	390	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	10	15	anti-parallel
Strand 3	B	64	72	anti-parallel
Strand 4	B	75	78	anti-parallel
Strand 5	B	89	92	anti-parallel
Strand 6	B	124	126	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	42	45	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	255	first strand
Strand 2	B	264	274	anti-parallel
Strand 3	B	279	284	anti-parallel
Strand 4	B	354	357	parallel
Strand 5	B	386	390	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	10	15	anti-parallel
Strand 3	C	66	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	38	first strand
Strand 2	C	42	44	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	75	78	anti-parallel
Strand 3	C	89	92	anti-parallel
Strand 4	C	124	126	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	255	first strand
Strand 2	C	264	274	anti-parallel
Strand 3	C	279	284	anti-parallel
Strand 4	C	354	357	parallel
Strand 5	C	386	390	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	15	first strand
Strand 2	D	64	70	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	42	45	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	89	91	anti-parallel
Strand 3	D	124	126	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	255	first strand
Strand 2	D	264	274	anti-parallel
Strand 3	D	279	284	anti-parallel
Strand 4	D	354	357	parallel
Strand 5	D	386	390	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PS5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS5