Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PS7 entry

There are 2 chains in PDB entry 8PS7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 340SER 636
B
 SER 340SER 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 8PS7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
345 353Right-handed alpha
Helix 2
AA2
A
385 393Right-handed alpha
Helix 3
AA3
A
424 430Right-handed alpha
Helix 4
AA4
A
446 467Right-handed alpha
Helix 5
AA5
A
511 523Right-handed alpha
Helix 6
AA6
A
524 531Right-handed alpha
Helix 7
AA7
A
534 552Right-handed alpha
Helix 8
AA8
A
568 578Right-handed alpha
Helix 9
AA9
A
581 590Right-handed alpha
Helix 10
AB1
A
591 595Right-handed 310
Helix 11
AB2
A
599 614Right-handed alpha
Helix 12
AB3
A
617 621Right-handed 310
Helix 13
AB4
A
623 634Right-handed alpha
Helix 14
AB5
B
345 353Right-handed alpha
Helix 15
AB6
B
391 395Right-handed 310
Helix 16
AB7
B
424 431Right-handed alpha
Helix 17
AB8
B
446 467Right-handed alpha
Helix 18
AB9
B
478 480Right-handed 310
Helix 19
AC1
B
511 523Right-handed alpha
Helix 20
AC2
B
524 531Right-handed alpha
Helix 21
AC3
B
534 552Right-handed alpha
Helix 22
AC4
B
569 578Right-handed alpha
Helix 23
AC5
B
581 590Right-handed alpha
Helix 24
AC6
B
591 595Right-handed 310
Helix 25
AC7
B
599 614Right-handed alpha
Helix 26
AC8
B
623 636Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8PS7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 369first strand
Strand 2
A
376 382anti-parallel
Strand 3
A
412 418anti-parallel
Strand 4
A
403 409anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
490 491anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
342 343first strand
Strand 2
B
403 409parallel
Strand 3
B
412 418anti-parallel
Strand 4
B
376 382anti-parallel
Strand 5
B
366 369anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
482 484first strand
Strand 2
B
490 492anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
556 558first strand
Strand 2
B
566 568anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il