Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PS8 entry

There are 3 chains in PDB entry 8PS8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 1886
B	ILE 140	LEU 302
G	SER 5	GLN 2050

There are167 helices in PDB entry 8PS8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	22	Right-handed alpha
Helix 2	AA2	A	27	32	Right-handed alpha
Helix 3	AA3	A	52	65	Right-handed alpha
Helix 4	AA4	A	66	72	Right-handed alpha
Helix 5	AA5	A	84	90	Right-handed alpha
Helix 6	AA6	A	329	350	Right-handed alpha
Helix 7	AA7	A	355	383	Right-handed alpha
Helix 8	AA8	A	383	390	Right-handed alpha
Helix 9	AA9	A	404	422	Right-handed alpha
Helix 10	AB1	A	429	441	Right-handed alpha
Helix 11	AB2	A	444	458	Right-handed alpha
Helix 12	AB3	A	463	483	Right-handed alpha
Helix 13	AB4	A	521	532	Right-handed alpha
Helix 14	AB5	A	608	615	Right-handed alpha
Helix 15	AB6	A	653	670	Right-handed alpha
Helix 16	AB7	A	687	700	Right-handed alpha
Helix 17	AB8	A	711	726	Right-handed alpha
Helix 18	AB9	A	741	754	Right-handed alpha
Helix 19	AC1	A	785	796	Right-handed alpha
Helix 20	AC2	A	796	813	Right-handed alpha
Helix 21	AC3	A	836	838	Right-handed 310
Helix 22	AC4	A	839	846	Right-handed alpha
Helix 23	AC5	A	847	856	Right-handed alpha
Helix 24	AC6	A	857	860	Right-handed 310
Helix 25	AC7	A	881	883	Right-handed 310
Helix 26	AC8	A	884	890	Right-handed alpha
Helix 27	AC9	A	898	908	Right-handed alpha
Helix 28	AD1	A	910	918	Right-handed alpha
Helix 29	AD2	A	929	933	Right-handed 310
Helix 30	AD3	A	935	974	Right-handed alpha
Helix 31	AD4	A	997	1003	Right-handed alpha
Helix 32	AD5	A	1006	1010	Right-handed 310
Helix 33	AD6	A	1014	1017	Right-handed 310
Helix 34	AD7	A	1033	1042	Right-handed alpha
Helix 35	AD8	A	1046	1057	Right-handed alpha
Helix 36	AD9	A	1085	1099	Right-handed alpha
Helix 37	AE1	A	1107	1111	Right-handed 310
Helix 38	AE2	A	1137	1149	Right-handed alpha
Helix 39	AE3	A	1194	1199	Right-handed alpha
Helix 40	AE4	A	1201	1208	Right-handed alpha
Helix 41	AE5	A	1209	1226	Right-handed alpha
Helix 42	AE6	A	1230	1237	Right-handed 310
Helix 43	AE7	A	1253	1262	Right-handed alpha
Helix 44	AE8	A	1275	1278	Right-handed 310
Helix 45	AE9	A	1279	1291	Right-handed alpha
Helix 46	AF1	A	1303	1305	Right-handed 310
Helix 47	AF2	A	1306	1321	Right-handed alpha
Helix 48	AF3	A	1336	1346	Right-handed alpha
Helix 49	AF4	A	1351	1358	Right-handed alpha
Helix 50	AF5	A	1362	1366	Right-handed 310
Helix 51	AF6	A	1390	1397	Right-handed alpha
Helix 52	AF7	A	1423	1430	Right-handed 310
Helix 53	AF8	A	1440	1443	Right-handed 310
Helix 54	AF9	A	1444	1477	Right-handed alpha
Helix 55	AG1	A	1478	1510	Right-handed alpha
Helix 56	AG2	A	1520	1528	Right-handed alpha
Helix 57	AG3	A	1532	1536	Right-handed 310
Helix 58	AG4	A	1546	1564	Right-handed alpha
Helix 59	AG5	A	1577	1582	Right-handed alpha
Helix 60	AG6	A	1584	1586	Right-handed 310
Helix 61	AG7	A	1587	1603	Right-handed alpha
Helix 62	AG8	A	1616	1621	Right-handed 310
Helix 63	AG9	A	1658	1663	Right-handed alpha
Helix 64	AH1	A	1666	1694	Right-handed alpha
Helix 65	AH2	A	1710	1717	Right-handed alpha
Helix 66	AH3	A	1740	1745	Right-handed alpha
Helix 67	AH4	A	1746	1758	Right-handed alpha
Helix 68	AH5	A	1777	1779	Right-handed 310
Helix 69	AH6	A	1783	1791	Right-handed alpha
Helix 70	AH7	A	1792	1801	Right-handed alpha
Helix 71	AH8	A	1804	1824	Right-handed alpha
Helix 72	AH9	A	1853	1862	Right-handed alpha
Helix 73	AI1	B	146	160	Right-handed alpha
Helix 74	AI2	B	171	176	Right-handed alpha
Helix 75	AI3	B	180	195	Right-handed alpha
Helix 76	AI4	B	205	215	Right-handed alpha
Helix 77	AI5	B	223	236	Right-handed alpha
Helix 78	AI6	B	242	254	Right-handed alpha
Helix 79	AI7	B	257	271	Right-handed alpha
Helix 80	AI8	B	279	299	Right-handed alpha
Helix 81	AI9	G	26	41	Right-handed alpha
Helix 82	AJ1	G	56	72	Right-handed alpha
Helix 83	AJ2	G	79	93	Right-handed alpha
Helix 84	AJ3	G	100	112	Right-handed alpha
Helix 85	AJ4	G	115	133	Right-handed alpha
Helix 86	AJ5	G	143	151	Right-handed alpha
Helix 87	AJ6	G	168	180	Right-handed alpha
Helix 88	AJ7	G	180	202	Right-handed alpha
Helix 89	AJ8	G	204	209	Right-handed alpha
Helix 90	AJ9	G	214	221	Right-handed alpha
Helix 91	AK1	G	227	233	Right-handed alpha
Helix 92	AK2	G	233	257	Right-handed alpha
Helix 93	AK3	G	259	267	Right-handed alpha
Helix 94	AK4	G	273	275	Right-handed 310
Helix 95	AK5	G	276	286	Right-handed alpha
Helix 96	AK6	G	292	314	Right-handed alpha
Helix 97	AK7	G	320	330	Right-handed alpha
Helix 98	AK8	G	345	360	Right-handed alpha
Helix 99	AK9	G	361	365	Right-handed 310
Helix 100	AL1	G	382	397	Right-handed alpha
Helix 101	AL2	G	434	446	Right-handed alpha
Helix 102	AL3	G	467	471	Right-handed 310
Helix 103	AL4	G	474	485	Right-handed alpha
Helix 104	AL5	G	490	494	Right-handed alpha
Helix 105	AL6	G	507	510	Right-handed 310
Helix 106	AL7	G	511	520	Right-handed alpha
Helix 107	AL8	G	544	549	Right-handed alpha
Helix 108	AL9	G	560	565	Right-handed alpha
Helix 109	AM1	G	581	588	Right-handed alpha
Helix 110	AM2	G	603	613	Right-handed alpha
Helix 111	AM3	G	626	641	Right-handed alpha
Helix 112	AM4	G	655	672	Right-handed alpha
Helix 113	AM5	G	687	699	Right-handed alpha
Helix 114	AM6	G	709	723	Right-handed alpha
Helix 115	AM7	G	747	759	Right-handed alpha
Helix 116	AM8	G	773	783	Right-handed alpha
Helix 117	AM9	G	784	788	Right-handed 310
Helix 118	AN1	G	803	808	Right-handed 310
Helix 119	AN2	G	814	824	Right-handed alpha
Helix 120	AN3	G	828	835	Right-handed 310
Helix 121	AN4	G	859	872	Right-handed alpha
Helix 122	AN5	G	876	899	Right-handed alpha
Helix 123	AN6	G	913	917	Right-handed 310
Helix 124	AN7	G	918	930	Right-handed alpha
Helix 125	AN8	G	940	959	Right-handed alpha
Helix 126	AN9	G	969	974	Right-handed 310
Helix 127	AO1	G	976	987	Right-handed alpha
Helix 128	AO2	G	988	992	Right-handed 310
Helix 129	AO3	G	996	1008	Right-handed alpha
Helix 130	AO4	G	1024	1031	Right-handed alpha
Helix 131	AO5	G	1034	1039	Right-handed 310
Helix 132	AO6	G	1047	1051	Right-handed 310
Helix 133	AO7	G	1058	1063	Right-handed 310
Helix 134	AO8	G	1069	1090	Right-handed alpha
Helix 135	AO9	G	1093	1097	Right-handed 310
Helix 136	AP1	G	1134	1144	Right-handed alpha
Helix 137	AP2	G	1148	1156	Right-handed alpha
Helix 138	AP3	G	1168	1174	Right-handed alpha
Helix 139	AP4	G	1189	1193	Right-handed 310
Helix 140	AP5	G	1257	1271	Right-handed alpha
Helix 141	AP6	G	1293	1305	Right-handed alpha
Helix 142	AP7	G	1308	1312	Right-handed 310
Helix 143	AP8	G	1325	1337	Right-handed alpha
Helix 144	AP9	G	1437	1447	Right-handed alpha
Helix 145	AQ1	G	1514	1524	Right-handed alpha
Helix 146	AQ2	G	1550	1558	Right-handed alpha
Helix 147	AQ3	G	1561	1565	Right-handed 310
Helix 148	AQ4	G	1566	1573	Right-handed alpha
Helix 149	AQ5	G	1581	1597	Right-handed alpha
Helix 150	AQ6	G	1677	1684	Right-handed alpha
Helix 151	AQ7	G	1684	1702	Right-handed alpha
Helix 152	AQ8	G	1705	1713	Right-handed alpha
Helix 153	AQ9	G	1724	1733	Right-handed alpha
Helix 154	AR1	G	1773	1795	Right-handed alpha
Helix 155	AR2	G	1809	1820	Right-handed alpha
Helix 156	AR3	G	1823	1840	Right-handed alpha
Helix 157	AR4	G	1858	1863	Right-handed alpha
Helix 158	AR5	G	1867	1883	Right-handed alpha
Helix 159	AR6	G	1904	1921	Right-handed alpha
Helix 160	AR7	G	1923	1930	Right-handed alpha
Helix 161	AR8	G	1940	1954	Right-handed alpha
Helix 162	AR9	G	1978	1983	Right-handed 310
Helix 163	AS1	G	1984	1996	Right-handed alpha
Helix 164	AS2	G	2002	2007	Right-handed alpha
Helix 165	AS3	G	2022	2033	Right-handed alpha
Helix 166	AS4	G	2035	2044	Right-handed alpha
Helix 167	AS5	G	2044	2049	Right-handed alpha

There are 31 sheets in PDB entry 8PS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	44	47	parallel
Strand 3	G	1663	1666	parallel
Strand 4	G	1804	1806	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	731	736	anti-parallel
Strand 3	A	702	707	parallel
Strand 4	A	677	681	parallel
Strand 5	A	767	770	parallel
Strand 6	A	820	822	parallel
Strand 7	A	862	869	parallel
Strand 8	A	922	926	parallel
Strand 9	A	639	643	anti-parallel
Strand 10	A	649	652	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	731	736	anti-parallel
Strand 3	A	702	707	parallel
Strand 4	A	677	681	parallel
Strand 5	A	767	770	parallel
Strand 6	A	820	822	parallel
Strand 7	A	862	869	parallel
Strand 8	A	825	826	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	503	first strand
Strand 2	A	509	515	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	A	896	897	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	982	first strand
Strand 2	G	963	964	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1031	1032	first strand
Strand 2	A	1019	1028	anti-parallel
Strand 3	A	1381	1389	anti-parallel
Strand 4	A	1332	1333	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1243	1245	first strand
Strand 2	A	1326	1329	parallel
Strand 3	A	1381	1389	anti-parallel
Strand 4	A	1019	1028	anti-parallel
Strand 5	A	1402	1410	anti-parallel
Strand 6	A	1649	1656	anti-parallel
Strand 7	A	1638	1645	anti-parallel
Strand 8	A	1538	1540	parallel
Strand 9	A	1572	1575	parallel
Strand 10	A	1624	1625	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1060	1067	first strand
Strand 2	A	1070	1077	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1104	1105	first strand
Strand 2	A	1185	1186	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1126	first strand
Strand 2	A	1172	1176	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1134	1136	first strand
Strand 2	A	1163	1167	anti-parallel
Strand 3	A	1152	1156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1604	1605	first strand
Strand 2	A	1631	1632	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1723	1724	first strand
Strand 2	A	1731	1732	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1768	1775	first strand
Strand 2	A	1877	1885	anti-parallel
Strand 3	A	1866	1873	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1837	1840	first strand
Strand 2	A	1848	1851	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	13	first strand
Strand 2	G	16	23	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	270	first strand
Strand 2	G	156	159	parallel
Strand 3	G	500	503	parallel
Strand 4	G	526	529	parallel
Strand 5	G	542	543	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	417	420	first strand
Strand 2	G	338	342	anti-parallel
Strand 3	G	376	380	anti-parallel
Strand 4	G	367	373	anti-parallel
Strand 5	G	488	489	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	568	571	first strand
Strand 2	G	577	580	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	592	594	first strand
Strand 2	G	616	620	parallel
Strand 3	G	647	652	parallel
Strand 4	G	676	682	parallel
Strand 5	G	702	705	parallel
Strand 6	G	728	732	parallel
Strand 7	G	763	767	parallel
Strand 8	G	798	800	parallel
Strand 9	G	592	594	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	739	740	first strand
Strand 2	G	854	857	anti-parallel
Strand 3	G	843	846	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	906	907	first strand
Strand 2	G	910	911	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	931	932	first strand
Strand 2	G	937	938	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1126	1128	first strand
Strand 2	G	1181	1185	anti-parallel
Strand 3	G	1194	1201	anti-parallel
Strand 4	G	1204	1213	anti-parallel
Strand 5	G	1218	1225	anti-parallel
Strand 6	G	1234	1242	anti-parallel
Strand 7	G	1251	1253	anti-parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1285	1291	first strand
Strand 2	G	1371	1383	anti-parallel
Strand 3	G	1387	1398	anti-parallel
Strand 4	G	1401	1413	anti-parallel
Strand 5	G	1350	1359	anti-parallel
Strand 6	G	1607	1612	anti-parallel
Strand 7	G	1649	1658	anti-parallel
Strand 8	G	1635	1643	anti-parallel
Strand 9	G	1623	1632	anti-parallel
Strand 10	G	1531	1542	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1423	1424	first strand
Strand 2	G	1469	1473	anti-parallel
Strand 3	G	1482	1492	anti-parallel
Strand 4	G	1498	1508	anti-parallel
Strand 5	G	1450	1452	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1423	1424	first strand
Strand 2	G	1469	1473	anti-parallel
Strand 3	G	1482	1492	anti-parallel
Strand 4	G	1463	1466	anti-parallel
Strand 5	G	1431	1434	anti-parallel
Strand 6	G	1525	1526	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1716	1720	first strand
Strand 2	G	1761	1765	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1737	1742	first strand
Strand 2	G	1745	1750	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1886	1893	first strand
Strand 2	G	1897	1903	anti-parallel
Strand 3	G	1852	1857	anti-parallel
Strand 4	G	1966	1968	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PS8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PS8