Analysis of interatomic Contacts of Structural Units in PDB entry:
8PSD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PSD entry

There are 3 chains in PDB entry 8PSD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ILE 19	ASP 1142
A	ILE 19	ASP 1142
B	ILE 19	ASP 1142

There are 69 helices in PDB entry 8PSD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	290	300	Right-handed alpha
Helix 2	AA2	C	334	339	Right-handed alpha
Helix 3	AA3	C	360	367	Right-handed 310
Helix 4	AA4	C	379	385	Right-handed 310
Helix 5	AA5	C	401	406	Right-handed 310
Helix 6	AA6	C	412	418	Right-handed alpha
Helix 7	AA7	C	498	501	Right-handed 310
Helix 8	AA8	C	612	616	Right-handed 310
Helix 9	AA9	C	733	739	Right-handed alpha
Helix 10	AB1	C	742	750	Right-handed alpha
Helix 11	AB2	C	754	779	Right-handed alpha
Helix 12	AB3	C	812	822	Right-handed alpha
Helix 13	AB4	C	845	852	Right-handed alpha
Helix 14	AB5	C	862	881	Right-handed alpha
Helix 15	AB6	C	882	885	Right-handed 310
Helix 16	AB7	C	893	904	Right-handed alpha
Helix 17	AB8	C	908	914	Right-handed alpha
Helix 18	AB9	C	915	936	Right-handed alpha
Helix 19	AC1	C	941	961	Right-handed alpha
Helix 20	AC2	C	962	964	Right-handed 310
Helix 21	AC3	C	972	980	Right-handed alpha
Helix 22	AC4	C	981	1029	Right-handed alpha
Helix 23	AC5	C	1136	1142	Right-handed alpha
Helix 24	AC6	A	290	300	Right-handed alpha
Helix 25	AC7	A	334	339	Right-handed alpha
Helix 26	AC8	A	379	386	Right-handed 310
Helix 27	AC9	A	401	406	Right-handed 310
Helix 28	AD1	A	412	418	Right-handed alpha
Helix 29	AD2	A	498	501	Right-handed 310
Helix 30	AD3	A	612	616	Right-handed 310
Helix 31	AD4	A	733	739	Right-handed alpha
Helix 32	AD5	A	743	750	Right-handed alpha
Helix 33	AD6	A	751	753	Right-handed 310
Helix 34	AD7	A	754	779	Right-handed alpha
Helix 35	AD8	A	812	822	Right-handed alpha
Helix 36	AD9	A	845	852	Right-handed alpha
Helix 37	AE1	A	862	881	Right-handed alpha
Helix 38	AE2	A	882	886	Right-handed 310
Helix 39	AE3	A	893	904	Right-handed alpha
Helix 40	AE4	A	908	914	Right-handed alpha
Helix 41	AE5	A	915	936	Right-handed alpha
Helix 42	AE6	A	944	961	Right-handed alpha
Helix 43	AE7	A	962	964	Right-handed 310
Helix 44	AE8	A	972	980	Right-handed alpha
Helix 45	AE9	A	981	1029	Right-handed alpha
Helix 46	AF1	A	1136	1142	Right-handed alpha
Helix 47	AF2	B	290	300	Right-handed alpha
Helix 48	AF3	B	334	339	Right-handed alpha
Helix 49	AF4	B	360	367	Right-handed 310
Helix 50	AF5	B	379	385	Right-handed 310
Helix 51	AF6	B	401	406	Right-handed 310
Helix 52	AF7	B	413	418	Right-handed alpha
Helix 53	AF8	B	498	501	Right-handed 310
Helix 54	AF9	B	612	616	Right-handed 310
Helix 55	AG1	B	733	739	Right-handed alpha
Helix 56	AG2	B	742	750	Right-handed alpha
Helix 57	AG3	B	754	779	Right-handed alpha
Helix 58	AG4	B	812	822	Right-handed alpha
Helix 59	AG5	B	845	851	Right-handed alpha
Helix 60	AG6	B	862	881	Right-handed alpha
Helix 61	AG7	B	883	887	Right-handed 310
Helix 62	AG8	B	893	904	Right-handed alpha
Helix 63	AG9	B	908	914	Right-handed alpha
Helix 64	AH1	B	915	936	Right-handed alpha
Helix 65	AH2	B	941	961	Right-handed alpha
Helix 66	AH3	B	962	964	Right-handed 310
Helix 67	AH4	B	972	980	Right-handed alpha
Helix 68	AH5	B	981	1029	Right-handed alpha
Helix 69	AH6	B	1136	1142	Right-handed alpha

There are 44 sheets in PDB entry 8PSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	28	first strand
Strand 2	C	57	65	anti-parallel
Strand 3	C	260	265	anti-parallel
Strand 4	C	87	91	anti-parallel
Strand 5	C	183	193	anti-parallel
Strand 6	C	196	206	anti-parallel
Strand 7	C	220	226	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	52	first strand
Strand 2	C	267	275	anti-parallel
Strand 3	C	281	286	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	233	237	anti-parallel
Strand 3	C	100	104	anti-parallel
Strand 4	C	113	117	anti-parallel
Strand 5	C	124	128	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	315	first strand
Strand 2	C	588	595	anti-parallel
Strand 3	C	605	609	anti-parallel
Strand 4	C	644	647	anti-parallel
Strand 5	C	638	641	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	391	399	anti-parallel
Strand 3	C	503	510	anti-parallel
Strand 4	C	427	433	anti-parallel
Strand 5	C	374	376	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	520	521	parallel
Strand 3	C	387	388	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	450	first strand
Strand 2	C	488	490	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	539	first strand
Strand 2	C	542	550	anti-parallel
Strand 3	C	580	584	anti-parallel
Strand 4	C	569	573	anti-parallel
Strand 5	C	561	563	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	651	first strand
Strand 2	C	687	692	parallel
Strand 3	C	666	671	anti-parallel
Strand 4	C	660	663	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	698	700	first strand
Strand 2	A	784	786	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	724	first strand
Strand 2	C	1055	1074	anti-parallel
Strand 3	C	1043	1052	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	707	724	first strand
Strand 2	C	1055	1074	anti-parallel
Strand 3	C	1090	1093	anti-parallel
Strand 4	C	1098	1101	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	729	732	first strand
Strand 2	C	854	857	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	786	first strand
Strand 2	B	698	700	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1077	1079	first strand
Strand 2	C	1082	1086	anti-parallel
Strand 3	C	1116	1118	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	27	first strand
Strand 2	A	58	65	anti-parallel
Strand 3	A	260	265	anti-parallel
Strand 4	A	87	91	anti-parallel
Strand 5	A	184	193	anti-parallel
Strand 6	A	196	205	anti-parallel
Strand 7	A	220	226	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	52	first strand
Strand 2	A	267	275	anti-parallel
Strand 3	A	281	286	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	233	237	anti-parallel
Strand 3	A	100	104	anti-parallel
Strand 4	A	113	118	anti-parallel
Strand 5	A	123	128	anti-parallel
Strand 6	A	166	167	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	315	first strand
Strand 2	A	588	595	anti-parallel
Strand 3	A	605	609	anti-parallel
Strand 4	A	644	647	anti-parallel
Strand 5	A	639	640	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	324	first strand
Strand 2	A	535	539	parallel
Strand 3	A	542	550	anti-parallel
Strand 4	A	580	584	anti-parallel
Strand 5	A	571	573	anti-parallel
Strand 6	A	561	562	anti-parallel
Strand 7	B	39	40	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	391	399	anti-parallel
Strand 3	A	503	511	anti-parallel
Strand 4	A	427	433	anti-parallel
Strand 5	A	374	376	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	520	521	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	450	first strand
Strand 2	A	488	490	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	651	first strand
Strand 2	A	687	692	parallel
Strand 3	A	666	671	anti-parallel
Strand 4	A	660	663	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	700	first strand
Strand 2	B	784	786	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	724	first strand
Strand 2	A	1055	1074	anti-parallel
Strand 3	A	1043	1052	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	724	first strand
Strand 2	A	1055	1074	anti-parallel
Strand 3	A	1090	1093	anti-parallel
Strand 4	A	1098	1101	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	732	first strand
Strand 2	A	854	857	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1079	first strand
Strand 2	A	1082	1086	anti-parallel
Strand 3	A	1116	1118	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	27	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	260	265	anti-parallel
Strand 4	B	87	91	anti-parallel
Strand 5	B	186	193	anti-parallel
Strand 6	B	196	202	anti-parallel
Strand 7	B	220	226	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	52	first strand
Strand 2	B	267	275	anti-parallel
Strand 3	B	281	286	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	233	237	anti-parallel
Strand 3	B	100	104	anti-parallel
Strand 4	B	114	118	anti-parallel
Strand 5	B	123	126	anti-parallel
Strand 6	B	165	168	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	315	first strand
Strand 2	B	588	595	anti-parallel
Strand 3	B	605	609	anti-parallel
Strand 4	B	644	647	anti-parallel
Strand 5	B	638	640	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	391	399	anti-parallel
Strand 3	B	503	511	anti-parallel
Strand 4	B	427	433	anti-parallel
Strand 5	B	374	376	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	520	521	parallel
Strand 3	B	387	388	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	450	first strand
Strand 2	B	488	490	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	484	485	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	539	first strand
Strand 2	B	542	550	anti-parallel
Strand 3	B	580	584	anti-parallel
Strand 4	B	569	573	anti-parallel
Strand 5	B	562	563	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	651	first strand
Strand 2	B	687	692	parallel
Strand 3	B	666	671	anti-parallel
Strand 4	B	660	663	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	1069	1071	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	724	first strand
Strand 2	B	1055	1066	anti-parallel
Strand 3	B	1043	1052	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	732	first strand
Strand 2	B	854	857	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1079	first strand
Strand 2	B	1082	1086	anti-parallel
Strand 3	B	1116	1118	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1090	1093	first strand
Strand 2	B	1098	1101	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PSD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PSD