Analysis of interatomic Contacts of Structural Units in PDB entry:
8PT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PT9 entry

There are 3 chains in PDB entry 8PT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8LEU 363
B
 ASP 7LEU 363
C
 ASN 8ASP 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8PT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 79Right-handed alpha
Helix 2
AA2
A
115 121Right-handed alpha
Helix 3
AA3
A
124 145Right-handed alpha
Helix 4
AA4
A
188 192Right-handed 310
Helix 5
AA5
A
193 199Right-handed alpha
Helix 6
AA6
A
205 221Right-handed alpha
Helix 7
AA7
A
231 241Right-handed alpha
Helix 8
AA8
A
245 251Right-handed alpha
Helix 9
AA9
A
253 263Right-handed alpha
Helix 10
AB1
A
270 275Right-handed alpha
Helix 11
AB2
A
285 302Right-handed alpha
Helix 12
AB3
A
311 317Right-handed alpha
Helix 13
AB4
A
318 323Right-handed alpha
Helix 14
AB5
A
348 361Right-handed alpha
Helix 15
AB6
B
63 80Right-handed alpha
Helix 16
AB7
B
115 121Right-handed alpha
Helix 17
AB8
B
124 145Right-handed alpha
Helix 18
AB9
B
193 198Right-handed alpha
Helix 19
AC1
B
205 221Right-handed alpha
Helix 20
AC2
B
231 241Right-handed alpha
Helix 21
AC3
B
245 251Right-handed alpha
Helix 22
AC4
B
253 263Right-handed alpha
Helix 23
AC5
B
270 275Right-handed alpha
Helix 24
AC6
B
284 302Right-handed alpha
Helix 25
AC7
B
305 309Right-handed 310
Helix 26
AC8
B
311 317Right-handed alpha
Helix 27
AC9
B
321 325Right-handed 310
Helix 28
AD1
B
326 331Right-handed alpha
Helix 29
AD2
B
348 361Right-handed alpha
Helix 30
AD3
C
63 79Right-handed alpha
Helix 31
AD4
C
115 119Right-handed alpha
Helix 32
AD5
C
124 145Right-handed alpha
Helix 33
AD6
C
193 198Right-handed alpha
Helix 34
AD7
C
205 221Right-handed alpha
Helix 35
AD8
C
231 241Right-handed alpha
Helix 36
AD9
C
245 251Right-handed alpha
Helix 37
AE1
C
253 263Right-handed alpha
Helix 38
AE2
C
270 275Right-handed alpha
Helix 39
AE3
C
284 302Right-handed alpha
Helix 40
AE4
C
311 317Right-handed alpha
Helix 41
AE5
C
318 323Right-handed alpha
Helix 42
AE6
C
326 331Right-handed alpha
Helix 43
AE7
C
348 362Right-handed alpha
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There are 9 sheets in PDB entry 8PT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
20 23anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 31first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
50 57anti-parallel
Strand 4
A
104 109anti-parallel
Strand 5
A
90 92anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
157 159anti-parallel
Strand 3
A
165 167anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 15first strand
Strand 2
B
18 23anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 31first strand
Strand 2
B
40 45anti-parallel
Strand 3
B
50 58anti-parallel
Strand 4
B
103 109anti-parallel
Strand 5
B
88 92anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
157 159anti-parallel
Strand 3
B
165 167anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 15first strand
Strand 2
C
18 23anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 31first strand
Strand 2
C
39 45anti-parallel
Strand 3
C
50 56anti-parallel
Strand 4
C
105 109anti-parallel
Strand 5
C
88 92anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 114first strand
Strand 2
C
157 159anti-parallel
Strand 3
C
165 167anti-parallel
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