Analysis of interatomic Contacts of Structural Units in PDB entry:
8PTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PTD entry

There is 1 chain in PDB entry 8PTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22GLU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 8PTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 70Right-handed alpha
Helix 2
AA2
A
178 182Right-handed 310
Helix 3
AA3
A
230 234Right-handed 310
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There are 7 sheets in PDB entry 8PTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
340 348anti-parallel
Strand 3
A
329 334anti-parallel
Strand 4
A
317 321anti-parallel
Strand 5
A
305 310anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
49 54anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
351 357anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
86 91anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
107 112anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 129first strand
Strand 2
A
132 137anti-parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
152 157anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 168first strand
Strand 2
A
171 176anti-parallel
Strand 3
A
190 195anti-parallel
Strand 4
A
200 206anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
221 226anti-parallel
Strand 3
A
237 242anti-parallel
Strand 4
A
247 251anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 262first strand
Strand 2
A
265 271anti-parallel
Strand 3
A
278 284anti-parallel
Strand 4
A
289 292anti-parallel
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