Analysis of interatomic Contacts of Structural Units in PDB entry:
8PTP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PTP entry

There are 9 chains in PDB entry 8PTP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 418
B	MET 1	ARG 418
C	MET 1	ARG 418
D	MET 1	ARG 418
E	MET 1	ARG 418
a	ASP 3	SER 84
b	ASP 3	SER 84
c	ASP 3	SER 84
d	ASP 3	SER 84

There are 90 helices in PDB entry 8PTP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	9	Right-handed alpha
Helix 2	AA2	A	10	22	Right-handed alpha
Helix 3	AA3	A	30	46	Right-handed alpha
Helix 4	AA4	A	82	89	Right-handed alpha
Helix 5	AA5	A	123	128	Right-handed alpha
Helix 6	AA6	A	132	136	Right-handed 310
Helix 7	AA7	A	154	166	Right-handed alpha
Helix 8	AA8	A	183	199	Right-handed alpha
Helix 9	AA9	A	212	223	Right-handed alpha
Helix 10	AB1	A	235	255	Right-handed alpha
Helix 11	AB2	A	266	278	Right-handed alpha
Helix 12	AB3	A	294	303	Right-handed alpha
Helix 13	AB4	A	325	335	Right-handed alpha
Helix 14	AB5	A	346	352	Right-handed alpha
Helix 15	AB6	A	367	372	Right-handed alpha
Helix 16	AB7	A	373	388	Right-handed alpha
Helix 17	AB8	A	392	403	Right-handed alpha
Helix 18	AB9	A	408	417	Right-handed alpha
Helix 19	AC1	B	2	9	Right-handed alpha
Helix 20	AC2	B	10	22	Right-handed alpha
Helix 21	AC3	B	30	45	Right-handed alpha
Helix 22	AC4	B	82	89	Right-handed alpha
Helix 23	AC5	B	125	130	Right-handed 310
Helix 24	AC6	B	153	166	Right-handed alpha
Helix 25	AC7	B	183	199	Right-handed alpha
Helix 26	AC8	B	212	223	Right-handed alpha
Helix 27	AC9	B	235	256	Right-handed alpha
Helix 28	AD1	B	266	278	Right-handed alpha
Helix 29	AD2	B	285	289	Right-handed 310
Helix 30	AD3	B	294	303	Right-handed alpha
Helix 31	AD4	B	325	336	Right-handed alpha
Helix 32	AD5	B	337	339	Right-handed 310
Helix 33	AD6	B	346	352	Right-handed alpha
Helix 34	AD7	B	373	388	Right-handed alpha
Helix 35	AD8	B	391	403	Right-handed alpha
Helix 36	AD9	B	408	418	Right-handed alpha
Helix 37	AE1	C	2	9	Right-handed alpha
Helix 38	AE2	C	10	22	Right-handed alpha
Helix 39	AE3	C	30	46	Right-handed alpha
Helix 40	AE4	C	82	89	Right-handed alpha
Helix 41	AE5	C	123	128	Right-handed alpha
Helix 42	AE6	C	155	166	Right-handed alpha
Helix 43	AE7	C	183	199	Right-handed alpha
Helix 44	AE8	C	212	223	Right-handed alpha
Helix 45	AE9	C	235	255	Right-handed alpha
Helix 46	AF1	C	266	278	Right-handed alpha
Helix 47	AF2	C	291	293	Right-handed 310
Helix 48	AF3	C	294	303	Right-handed alpha
Helix 49	AF4	C	325	335	Right-handed alpha
Helix 50	AF5	C	346	352	Right-handed alpha
Helix 51	AF6	C	373	388	Right-handed alpha
Helix 52	AF7	C	391	405	Right-handed alpha
Helix 53	AF8	C	408	418	Right-handed alpha
Helix 54	AF9	D	2	8	Right-handed alpha
Helix 55	AG1	D	10	22	Right-handed alpha
Helix 56	AG2	D	30	45	Right-handed alpha
Helix 57	AG3	D	82	89	Right-handed alpha
Helix 58	AG4	D	123	128	Right-handed alpha
Helix 59	AG5	D	155	166	Right-handed alpha
Helix 60	AG6	D	183	199	Right-handed alpha
Helix 61	AG7	D	212	223	Right-handed alpha
Helix 62	AG8	D	235	256	Right-handed alpha
Helix 63	AG9	D	266	278	Right-handed alpha
Helix 64	AH1	D	294	303	Right-handed alpha
Helix 65	AH2	D	325	335	Right-handed alpha
Helix 66	AH3	D	346	352	Right-handed alpha
Helix 67	AH4	D	373	388	Right-handed alpha
Helix 68	AH5	D	391	406	Right-handed alpha
Helix 69	AH6	D	408	418	Right-handed alpha
Helix 70	AH7	E	10	21	Right-handed alpha
Helix 71	AH8	E	30	45	Right-handed alpha
Helix 72	AH9	E	82	89	Right-handed alpha
Helix 73	AI1	E	123	128	Right-handed alpha
Helix 74	AI2	E	155	166	Right-handed alpha
Helix 75	AI3	E	183	199	Right-handed alpha
Helix 76	AI4	E	212	223	Right-handed alpha
Helix 77	AI5	E	235	256	Right-handed alpha
Helix 78	AI6	E	266	278	Right-handed alpha
Helix 79	AI7	E	290	303	Right-handed alpha
Helix 80	AI8	E	327	334	Right-handed alpha
Helix 81	AI9	E	346	352	Right-handed alpha
Helix 82	AJ1	E	367	372	Right-handed alpha
Helix 83	AJ2	E	373	388	Right-handed alpha
Helix 84	AJ3	E	391	399	Right-handed alpha
Helix 85	AJ4	E	408	417	Right-handed alpha
Helix 86	AJ5	a	9	23	Right-handed alpha
Helix 87	AJ6	b	9	23	Right-handed alpha
Helix 88	AJ7	c	9	22	Right-handed alpha
Helix 89	AJ8	d	9	22	Right-handed alpha
Helix 90	AJ9	d	66	68	Right-handed 310

There are 22 sheets in PDB entry 8PTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	57	first strand
Strand 2	A	63	66	anti-parallel
Strand 3	A	79	81	anti-parallel
Strand 4	A	112	119	parallel
Strand 5	A	96	102	anti-parallel
Strand 6	A	50	57	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	203	211	parallel
Strand 3	A	259	265	parallel
Strand 4	A	312	320	parallel
Strand 5	A	305	306	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	231	first strand
Strand 2	A	203	211	parallel
Strand 3	A	259	265	parallel
Strand 4	A	312	320	parallel
Strand 5	A	173	178	parallel
Strand 6	A	341	345	parallel
Strand 7	A	358	365	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	289	290	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	57	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	79	81	anti-parallel
Strand 4	B	111	119	parallel
Strand 5	B	96	102	anti-parallel
Strand 6	B	49	57	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	306	307	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	168	169	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	203	211	parallel
Strand 3	B	259	265	parallel
Strand 4	B	312	320	parallel
Strand 5	B	173	178	parallel
Strand 6	B	341	345	parallel
Strand 7	B	358	365	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	57	first strand
Strand 2	C	63	66	anti-parallel
Strand 3	C	79	81	anti-parallel
Strand 4	C	111	119	parallel
Strand 5	C	96	102	anti-parallel
Strand 6	C	49	57	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	168	169	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	231	first strand
Strand 2	C	203	211	parallel
Strand 3	C	259	265	parallel
Strand 4	C	312	320	parallel
Strand 5	C	173	178	parallel
Strand 6	C	341	344	parallel
Strand 7	C	364	365	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	57	first strand
Strand 2	D	63	66	anti-parallel
Strand 3	D	79	81	anti-parallel
Strand 4	D	111	119	parallel
Strand 5	D	96	102	anti-parallel
Strand 6	D	49	57	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	230	first strand
Strand 2	D	203	209	parallel
Strand 3	D	259	265	parallel
Strand 4	D	312	320	parallel
Strand 5	D	173	178	parallel
Strand 6	D	341	344	parallel
Strand 7	D	364	365	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	57	first strand
Strand 2	E	63	66	anti-parallel
Strand 3	E	79	81	anti-parallel
Strand 4	E	111	119	parallel
Strand 5	E	96	102	anti-parallel
Strand 6	E	49	57	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	231	first strand
Strand 2	E	203	211	parallel
Strand 3	E	260	265	parallel
Strand 4	E	313	320	parallel
Strand 5	E	174	178	parallel
Strand 6	E	341	344	parallel
Strand 7	E	364	365	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	26	29	first strand
Strand 2	a	35	38	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	40	46	first strand
Strand 2	a	49	54	anti-parallel
Strand 3	a	61	64	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	35	37	first strand
Strand 2	b	27	30	anti-parallel
Strand 3	b	68	73	anti-parallel
Strand 4	b	76	80	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	39	42	first strand
Strand 2	b	49	55	anti-parallel
Strand 3	b	45	46	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	39	42	first strand
Strand 2	b	49	55	anti-parallel
Strand 3	b	61	64	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	61	64	first strand
Strand 2	c	49	55	anti-parallel
Strand 3	c	35	46	anti-parallel
Strand 4	c	26	30	anti-parallel
Strand 5	c	68	73	anti-parallel
Strand 6	c	76	80	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	25	29	first strand
Strand 2	d	35	46	anti-parallel
Strand 3	d	49	55	anti-parallel
Strand 4	d	61	64	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PTP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PTP