Analysis of interatomic Contacts of Structural Units in PDB entry:
8PTS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PTS entry

There are 2 chains in PDB entry 8PTS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 195
B
 SER 2ARG 194
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8PTS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 28Right-handed alpha
Helix 2
AA2
A
57 68Right-handed alpha
Helix 3
AA3
A
85 94Right-handed alpha
Helix 4
AA4
A
103 112Right-handed alpha
Helix 5
AA5
A
126 138Right-handed alpha
Helix 6
AA6
A
141 159Right-handed alpha
Helix 7
AA7
A
173 194Right-handed alpha
Helix 8
AA8
B
16 28Right-handed alpha
Helix 9
AA9
B
57 67Right-handed alpha
Helix 10
AB1
B
85 94Right-handed alpha
Helix 11
AB2
B
103 112Right-handed alpha
Helix 12
AB3
B
126 137Right-handed alpha
Helix 13
AB4
B
141 159Right-handed alpha
Helix 14
AB5
B
173 185Right-handed alpha
Helix 15
AB6
B
185 194Right-handed alpha
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There are 4 sheets in PDB entry 8PTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
97 101parallel
Strand 3
A
7 10parallel
Strand 4
A
118 123parallel
Strand 5
A
167 170parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
38 39parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
70 76anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
97 101parallel
Strand 3
B
7 10parallel
Strand 4
B
118 123parallel
Strand 5
B
167 170parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
38 39parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
70 76anti-parallel
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