Analysis of interatomic Contacts of Structural Units in PDB entry:
8PTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PTY entry

There are 3 chains in PDB entry 8PTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 722
B	LEU 6	LYS 823
C	SER 85	LYS 547

There are 23 helices in PDB entry 8PTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	81	Right-handed 310
Helix 2	AA2	A	702	704	Right-handed 310
Helix 3	AA3	B	351	353	Right-handed 310
Helix 4	AA4	B	467	479	Right-handed alpha
Helix 5	AA5	B	547	555	Right-handed alpha
Helix 6	AA6	B	733	737	Right-handed 310
Helix 7	AA7	C	99	103	Right-handed 310
Helix 8	AA8	C	131	140	Right-handed alpha
Helix 9	AA9	C	143	158	Right-handed alpha
Helix 10	AB1	C	178	195	Right-handed alpha
Helix 11	AB2	C	200	209	Right-handed alpha
Helix 12	AB3	C	223	227	Right-handed 310
Helix 13	AB4	C	228	239	Right-handed alpha
Helix 14	AB5	C	251	258	Right-handed alpha
Helix 15	AB6	C	263	278	Right-handed alpha
Helix 16	AB7	C	293	307	Right-handed alpha
Helix 17	AB8	C	326	334	Right-handed alpha
Helix 18	AB9	C	341	356	Right-handed alpha
Helix 19	AC1	C	370	374	Right-handed 310
Helix 20	AC2	C	382	395	Right-handed alpha
Helix 21	AC3	C	400	405	Right-handed alpha
Helix 22	AC4	C	496	512	Right-handed alpha
Helix 23	AC5	C	524	533	Right-handed alpha

There are 36 sheets in PDB entry 8PTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	368	376	anti-parallel
Strand 3	A	11	12	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	368	376	anti-parallel
Strand 3	A	358	363	anti-parallel
Strand 4	A	346	351	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	53	54	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	76	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	91	94	anti-parallel
Strand 4	A	104	107	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	117	first strand
Strand 2	A	123	128	anti-parallel
Strand 3	A	132	137	anti-parallel
Strand 4	A	142	147	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	206	212	anti-parallel
Strand 3	A	219	225	anti-parallel
Strand 4	A	230	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	253	256	anti-parallel
Strand 3	A	264	268	anti-parallel
Strand 4	A	277	279	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	294	first strand
Strand 2	A	301	307	anti-parallel
Strand 3	A	319	325	anti-parallel
Strand 4	A	330	337	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	395	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	416	419	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	439	443	anti-parallel
Strand 3	A	447	452	anti-parallel
Strand 4	A	487	493	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	514	519	anti-parallel
Strand 3	A	525	532	anti-parallel
Strand 4	A	545	549	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	514	519	anti-parallel
Strand 3	A	525	532	anti-parallel
Strand 4	A	553	554	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	559	first strand
Strand 2	A	571	573	anti-parallel
Strand 3	A	578	581	anti-parallel
Strand 4	A	590	592	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	615	first strand
Strand 2	A	618	624	anti-parallel
Strand 3	A	630	632	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	646	first strand
Strand 2	A	651	654	anti-parallel
Strand 3	A	659	661	anti-parallel
Strand 4	A	689	690	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	701	first strand
Strand 2	A	706	710	anti-parallel
Strand 3	A	716	720	anti-parallel
Strand 4	C	421	429	anti-parallel
Strand 5	C	432	435	anti-parallel
Strand 6	C	446	454	anti-parallel
Strand 7	C	472	477	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	701	first strand
Strand 2	A	706	710	anti-parallel
Strand 3	A	716	720	anti-parallel
Strand 4	C	421	429	anti-parallel
Strand 5	C	438	441	anti-parallel
Strand 6	C	446	454	anti-parallel
Strand 7	C	472	477	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	816	820	anti-parallel
Strand 3	B	806	811	anti-parallel
Strand 4	B	782	787	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	43	first strand
Strand 2	B	50	55	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	87	91	anti-parallel
Strand 4	B	101	103	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	117	first strand
Strand 2	B	128	134	anti-parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	148	151	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	117	first strand
Strand 2	B	128	134	anti-parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	155	156	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	169	first strand
Strand 2	B	176	180	anti-parallel
Strand 3	B	188	190	anti-parallel
Strand 4	B	199	202	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	215	first strand
Strand 2	B	222	228	anti-parallel
Strand 3	B	233	238	anti-parallel
Strand 4	B	278	279	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	289	first strand
Strand 2	B	309	311	anti-parallel
Strand 3	B	315	317	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	300	302	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	349	first strand
Strand 2	B	355	359	anti-parallel
Strand 3	B	365	370	anti-parallel
Strand 4	B	378	381	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	396	first strand
Strand 2	B	403	407	anti-parallel
Strand 3	B	411	418	anti-parallel
Strand 4	B	427	436	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	448	first strand
Strand 2	B	451	454	anti-parallel
Strand 3	B	461	465	anti-parallel
Strand 4	B	559	563	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	575	first strand
Strand 2	B	581	586	anti-parallel
Strand 3	B	597	600	anti-parallel
Strand 4	B	606	608	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	622	first strand
Strand 2	B	629	633	anti-parallel
Strand 3	B	639	643	anti-parallel
Strand 4	B	655	657	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	677	first strand
Strand 2	B	683	688	anti-parallel
Strand 3	B	693	697	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	728	first strand
Strand 2	B	738	744	anti-parallel
Strand 3	B	749	754	anti-parallel
Strand 4	B	766	771	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	164	170	parallel
Strand 3	C	214	220	parallel
Strand 4	C	242	243	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	285	first strand
Strand 2	C	314	317	parallel
Strand 3	C	361	364	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	520	first strand
Strand 2	C	541	545	anti-parallel
Strand 3	C	536	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PTY