Analysis of interatomic Contacts of Structural Units in PDB entry:
8PU0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PU0 entry

There are 5 chains in PDB entry 8PU0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 1332
B	VAL 5	ALA 825
C	SER 10	LYS 547
E	TYR 931	LEU 1265
X	G 1	C 71

There are 79 helices in PDB entry 8PU0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	61	Right-handed alpha
Helix 2	AA2	A	664	668	Right-handed 310
Helix 3	AA3	A	669	678	Right-handed alpha
Helix 4	AA4	A	679	682	Right-handed 310
Helix 5	AA5	A	721	736	Right-handed alpha
Helix 6	AA6	A	737	747	Right-handed alpha
Helix 7	AA7	A	753	759	Right-handed alpha
Helix 8	AA8	A	759	765	Right-handed alpha
Helix 9	AA9	A	766	775	Right-handed alpha
Helix 10	AB1	A	776	785	Right-handed alpha
Helix 11	AB2	A	814	831	Right-handed alpha
Helix 12	AB3	A	835	845	Right-handed alpha
Helix 13	AB4	A	850	864	Right-handed alpha
Helix 14	AB5	A	873	886	Right-handed alpha
Helix 15	AB6	A	887	897	Right-handed alpha
Helix 16	AB7	A	899	909	Right-handed alpha
Helix 17	AB8	A	913	927	Right-handed alpha
Helix 18	AB9	A	928	940	Right-handed alpha
Helix 19	AC1	A	942	953	Right-handed alpha
Helix 20	AC2	A	954	956	Right-handed 310
Helix 21	AC3	A	957	968	Right-handed alpha
Helix 22	AC4	A	970	978	Right-handed alpha
Helix 23	AC5	A	982	996	Right-handed alpha
Helix 24	AC6	A	1002	1012	Right-handed alpha
Helix 25	AC7	A	1029	1037	Right-handed alpha
Helix 26	AC8	A	1046	1059	Right-handed alpha
Helix 27	AC9	A	1062	1072	Right-handed alpha
Helix 28	AD1	A	1075	1086	Right-handed alpha
Helix 29	AD2	A	1088	1100	Right-handed alpha
Helix 30	AD3	A	1101	1106	Right-handed 310
Helix 31	AD4	A	1108	1141	Right-handed alpha
Helix 32	AD5	A	1221	1230	Right-handed alpha
Helix 33	AD6	A	1232	1246	Right-handed alpha
Helix 34	AD7	A	1248	1274	Right-handed alpha
Helix 35	AD8	B	193	196	Right-handed 310
Helix 36	AD9	B	467	479	Right-handed alpha
Helix 37	AE1	B	547	554	Right-handed alpha
Helix 38	AE2	C	11	32	Right-handed alpha
Helix 39	AE3	C	37	49	Right-handed alpha
Helix 40	AE4	C	56	62	Right-handed alpha
Helix 41	AE5	C	65	73	Right-handed alpha
Helix 42	AE6	C	74	76	Right-handed 310
Helix 43	AE7	C	79	84	Right-handed 310
Helix 44	AE8	C	100	104	Right-handed 310
Helix 45	AE9	C	131	141	Right-handed alpha
Helix 46	AF1	C	143	158	Right-handed alpha
Helix 47	AF2	C	178	195	Right-handed alpha
Helix 48	AF3	C	200	210	Right-handed alpha
Helix 49	AF4	C	223	227	Right-handed 310
Helix 50	AF5	C	228	237	Right-handed alpha
Helix 51	AF6	C	251	258	Right-handed alpha
Helix 52	AF7	C	263	278	Right-handed alpha
Helix 53	AF8	C	293	307	Right-handed alpha
Helix 54	AF9	C	326	334	Right-handed alpha
Helix 55	AG1	C	341	354	Right-handed alpha
Helix 56	AG2	C	370	374	Right-handed 310
Helix 57	AG3	C	383	395	Right-handed alpha
Helix 58	AG4	C	405	414	Right-handed alpha
Helix 59	AG5	C	462	466	Right-handed 310
Helix 60	AG6	C	496	512	Right-handed alpha
Helix 61	AG7	C	526	532	Right-handed alpha
Helix 62	AG8	E	932	940	Right-handed alpha
Helix 63	AG9	E	942	953	Right-handed alpha
Helix 64	AH1	E	954	956	Right-handed 310
Helix 65	AH2	E	957	968	Right-handed alpha
Helix 66	AH3	E	970	978	Right-handed alpha
Helix 67	AH4	E	982	997	Right-handed alpha
Helix 68	AH5	E	1002	1011	Right-handed alpha
Helix 69	AH6	E	1021	1026	Right-handed 310
Helix 70	AH7	E	1027	1037	Right-handed alpha
Helix 71	AH8	E	1045	1059	Right-handed alpha
Helix 72	AH9	E	1066	1072	Right-handed alpha
Helix 73	AI1	E	1075	1087	Right-handed alpha
Helix 74	AI2	E	1108	1130	Right-handed alpha
Helix 75	AI3	E	1131	1131	Right-handed 310
Helix 76	AI4	E	1228	1229	Right-handed 310
Helix 77	AI5	E	1230	1245	Right-handed alpha
Helix 78	AI6	E	1250	1262	Right-handed alpha
Helix 79	AI7	E	1263	1265	Right-handed 310

There are 32 sheets in PDB entry 8PU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	12	first strand
Strand 2	A	367	376	anti-parallel
Strand 3	A	358	363	anti-parallel
Strand 4	A	346	351	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	33	37	anti-parallel
Strand 3	A	41	45	anti-parallel
Strand 4	A	50	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	75	first strand
Strand 2	A	83	87	anti-parallel
Strand 3	A	91	95	anti-parallel
Strand 4	A	103	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	117	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	132	136	anti-parallel
Strand 4	A	142	147	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	206	209	anti-parallel
Strand 3	A	222	225	anti-parallel
Strand 4	A	230	233	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	262	268	anti-parallel
Strand 4	A	274	279	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	294	first strand
Strand 2	A	301	307	anti-parallel
Strand 3	A	319	326	anti-parallel
Strand 4	A	329	337	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	395	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	416	419	anti-parallel
Strand 4	A	463	465	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	439	443	anti-parallel
Strand 3	A	448	452	anti-parallel
Strand 4	A	481	489	anti-parallel
Strand 5	A	544	546	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	510	first strand
Strand 2	A	513	515	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	527	first strand
Strand 2	A	552	554	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	563	first strand
Strand 2	A	568	573	anti-parallel
Strand 3	A	578	581	anti-parallel
Strand 4	A	590	592	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	612	first strand
Strand 2	A	621	624	anti-parallel
Strand 3	A	630	631	anti-parallel
Strand 4	A	636	638	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	646	first strand
Strand 2	A	651	655	anti-parallel
Strand 3	A	659	661	anti-parallel
Strand 4	A	688	690	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	701	first strand
Strand 2	A	706	711	anti-parallel
Strand 3	A	715	719	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	12	first strand
Strand 2	B	816	821	anti-parallel
Strand 3	B	809	811	anti-parallel
Strand 4	B	782	784	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	32	35	anti-parallel
Strand 3	B	40	44	anti-parallel
Strand 4	B	49	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	66	first strand
Strand 2	B	77	81	anti-parallel
Strand 3	B	87	93	anti-parallel
Strand 4	B	96	103	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	127	134	anti-parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	148	156	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	169	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	187	191	anti-parallel
Strand 4	B	198	203	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	218	first strand
Strand 2	B	221	228	anti-parallel
Strand 3	B	233	241	anti-parallel
Strand 4	B	267	279	anti-parallel
Strand 5	B	258	264	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	291	first strand
Strand 2	B	307	311	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	349	first strand
Strand 2	B	355	359	anti-parallel
Strand 3	B	365	370	anti-parallel
Strand 4	B	378	380	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	403	407	anti-parallel
Strand 3	B	412	418	anti-parallel
Strand 4	B	427	432	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	446	first strand
Strand 2	B	451	456	anti-parallel
Strand 3	B	461	465	anti-parallel
Strand 4	B	559	563	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	575	first strand
Strand 2	B	581	586	anti-parallel
Strand 3	B	596	600	anti-parallel
Strand 4	B	606	610	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	622	first strand
Strand 2	B	628	633	anti-parallel
Strand 3	B	638	643	anti-parallel
Strand 4	B	655	660	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	676	first strand
Strand 2	B	684	688	anti-parallel
Strand 3	B	693	696	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	728	first strand
Strand 2	B	739	744	anti-parallel
Strand 3	B	749	753	anti-parallel
Strand 4	B	768	771	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	165	169	parallel
Strand 3	C	215	221	parallel
Strand 4	C	240	244	parallel
Strand 5	C	280	285	parallel
Strand 6	C	314	317	parallel
Strand 7	C	361	365	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	429	first strand
Strand 2	C	432	441	anti-parallel
Strand 3	C	446	455	anti-parallel
Strand 4	C	474	477	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	469	472	first strand
Strand 2	C	517	520	parallel
Strand 3	C	541	545	anti-parallel
Strand 4	C	536	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PU0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PU0