Analysis of interatomic Contacts of Structural Units in PDB entry:
8PU1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PU1 entry

There are 2 chains in PDB entry 8PU1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 75
B
 ALA 0VAL 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8PU1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 39Right-handed alpha
Helix 2
AA2
A
49 57Right-handed 310
Helix 3
AA3
A
64 75Right-handed alpha
Helix 4
AA4
B
1 7Right-handed alpha
Helix 5
AA5
B
10 17Right-handed alpha
Helix 6
AA6
B
30 34Right-handed 310
Helix 7
AA7
B
35 53Right-handed alpha
Helix 8
AA8
B
54 59Right-handed alpha
Helix 9
AA9
B
67 79Right-handed alpha
Helix 10
AB1
B
83 88Right-handed alpha
Helix 11
AB2
B
100 106Right-handed alpha
Helix 12
AB3
B
107 110Right-handed 310
Helix 13
AB4
B
150 164Right-handed alpha
Helix 14
AB5
B
171 183Right-handed alpha
Helix 15
AB6
B
188 193Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8PU1.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
16 21parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
42 47anti-parallel
Strand 5
B
62 65anti-parallel
Strand 6
B
92 97anti-parallel
Strand 7
B
144 149parallel
Strand 8
B
130 135anti-parallel
Strand 9
B
113 118anti-parallel
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