Analysis of interatomic Contacts of Structural Units in PDB entry:
8PU3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PU3 entry

There are 4 chains in PDB entry 8PU3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LEU 73
B
 LEU -5LEU 73
C
 MET 1CYS 203
D
 MET 1CYS 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8PU3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 37Right-handed alpha
Helix 2
AA2
A
47 55Right-handed 310
Helix 3
AA3
A
62 71Right-handed alpha
Helix 4
AA4
B
22 37Right-handed alpha
Helix 5
AA5
B
47 55Right-handed 310
Helix 6
AA6
B
62 71Right-handed alpha
Helix 7
AA7
C
2 7Right-handed alpha
Helix 8
AA8
C
10 17Right-handed alpha
Helix 9
AA9
C
30 34Right-handed 310
Helix 10
AB1
C
35 51Right-handed alpha
Helix 11
AB2
C
54 59Right-handed alpha
Helix 12
AB3
C
67 79Right-handed alpha
Helix 13
AB4
C
83 88Right-handed alpha
Helix 14
AB5
C
101 106Right-handed alpha
Helix 15
AB6
C
107 110Right-handed 310
Helix 16
AB7
C
150 167Right-handed alpha
Helix 17
AB8
C
170 183Right-handed alpha
Helix 18
AB9
C
188 202Right-handed alpha
Helix 19
AC1
D
2 7Right-handed alpha
Helix 20
AC2
D
10 17Right-handed alpha
Helix 21
AC3
D
30 34Right-handed 310
Helix 22
AC4
D
35 51Right-handed alpha
Helix 23
AC5
D
54 59Right-handed alpha
Helix 24
AC6
D
67 79Right-handed alpha
Helix 25
AC7
D
83 88Right-handed alpha
Helix 26
AC8
D
104 110Right-handed 310
Helix 27
AC9
D
151 164Right-handed alpha
Helix 28
AD1
D
170 183Right-handed alpha
Helix 29
AD2
D
188 203Right-handed alpha
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There are 2 sheets in PDB entry 8PU3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
14 19parallel
Strand 3
A
2 8anti-parallel
Strand 4
A
40 45anti-parallel
Strand 5
C
62 65anti-parallel
Strand 6
C
92 97anti-parallel
Strand 7
C
144 149parallel
Strand 8
C
130 135anti-parallel
Strand 9
C
113 118anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
14 19parallel
Strand 3
B
2 8anti-parallel
Strand 4
B
40 45anti-parallel
Strand 5
D
62 65anti-parallel
Strand 6
D
92 98anti-parallel
Strand 7
D
144 150parallel
Strand 8
D
130 135anti-parallel
Strand 9
D
113 118anti-parallel
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