Analysis of interatomic Contacts of Structural Units in PDB entry:
8PU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PU5 entry

There is 1 chain in PDB entry 8PU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 3TYR 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8PU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
7 17Right-handed alpha
Helix 2
AA2
B
20 27Right-handed alpha
Helix 3
AA3
B
35 53Right-handed alpha
Helix 4
AA4
B
54 56Right-handed 310
Helix 5
AA5
B
57 65Right-handed alpha
Helix 6
AA6
B
78 89Right-handed alpha
Helix 7
AA7
B
90 94Right-handed 310
Helix 8
AA8
B
97 101Right-handed 310
Helix 9
AA9
B
106 121Right-handed alpha
Helix 10
AB1
B
121 142Right-handed alpha
Helix 11
AB2
B
143 150Right-handed alpha
Helix 12
AB3
B
150 156Right-handed alpha
Helix 13
AB4
B
173 177Right-handed 310
Helix 14
AB5
B
222 225Right-handed 310
Helix 15
AB6
B
283 321Right-handed alpha
Helix 16
AB7
B
339 342Right-handed 310
Helix 17
AB8
B
343 377Right-handed alpha
Helix 18
AB9
B
379 416Right-handed alpha
Helix 19
AC1
B
417 425Right-handed 310
Helix 20
AC2
B
426 436Right-handed alpha
Helix 21
AC3
B
437 439Right-handed 310
Helix 22
AC4
B
443 453Right-handed alpha
Helix 23
AC5
B
456 460Right-handed 310
Helix 24
AC6
B
461 479Right-handed alpha
Helix 25
AC7
B
484 512Right-handed alpha
Helix 26
AC8
B
513 549Right-handed alpha
Helix 27
AC9
B
553 571Right-handed alpha
Helix 28
AD1
B
573 584Right-handed alpha
Helix 29
AD2
B
586 591Right-handed alpha
Helix 30
AD3
B
593 597Right-handed 310
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There are 4 sheets in PDB entry 8PU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
72 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
209 216parallel
Strand 3
B
180 183parallel
Strand 4
B
189 199anti-parallel
Strand 5
B
265 278anti-parallel
Strand 6
B
249 254anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 164first strand
Strand 2
B
209 216parallel
Strand 3
B
227 233anti-parallel
Strand 4
B
265 278anti-parallel
Strand 5
B
249 254anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 237first strand
Strand 2
B
243 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il