Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PUL entry

There are 4 chains in PDB entry 8PUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	CYS 228
C	GLU 1	CYS 225
B	ASP 232	GLU 444
D	ASP 232	THR 238

There are 18 helices in PDB entry 8PUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	62	65	Right-handed 310
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	87	91	Right-handed 310
Helix 5	AA5	A	165	167	Right-handed 310
Helix 6	AA6	A	210	213	Right-handed 310
Helix 7	AA7	C	28	32	Right-handed 310
Helix 8	AA8	C	62	65	Right-handed 310
Helix 9	AA9	C	74	76	Right-handed 310
Helix 10	AB1	C	87	91	Right-handed 310
Helix 11	AB2	C	165	167	Right-handed 310
Helix 12	AB3	C	210	213	Right-handed 310
Helix 13	AB4	B	310	314	Right-handed 310
Helix 14	AB5	B	352	357	Right-handed alpha
Helix 15	AB6	B	414	418	Right-handed alpha
Helix 16	AB7	D	310	314	Right-handed 310
Helix 17	AB8	D	352	357	Right-handed alpha
Helix 18	AB9	D	414	418	Right-handed alpha

There are 22 sheets in PDB entry 8PUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	116	120	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	116	120	parallel
Strand 3	A	92	101	anti-parallel
Strand 4	A	107	112	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	144	154	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	172	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	144	154	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	178	179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	214	219	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	D	436	442	anti-parallel
Strand 3	D	422	428	anti-parallel
Strand 4	D	376	381	anti-parallel
Strand 5	D	384	385	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	116	120	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	116	120	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	111	112	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	144	154	anti-parallel
Strand 3	C	185	194	anti-parallel
Strand 4	C	172	174	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	144	154	anti-parallel
Strand 3	C	185	194	anti-parallel
Strand 4	C	178	179	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	204	209	anti-parallel
Strand 3	C	214	219	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	236	first strand
Strand 2	B	250	256	anti-parallel
Strand 3	B	301	306	anti-parallel
Strand 4	B	293	298	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	245	first strand
Strand 2	B	333	338	parallel
Strand 3	B	315	321	anti-parallel
Strand 4	B	264	269	anti-parallel
Strand 5	B	275	280	anti-parallel
Strand 6	B	284	285	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	245	first strand
Strand 2	B	333	338	parallel
Strand 3	B	315	321	anti-parallel
Strand 4	B	328	329	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	360	370	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	390	394	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	385	first strand
Strand 2	B	376	381	anti-parallel
Strand 3	B	422	428	anti-parallel
Strand 4	B	436	441	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	236	first strand
Strand 2	D	250	256	anti-parallel
Strand 3	D	301	306	anti-parallel
Strand 4	D	293	298	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	245	first strand
Strand 2	D	333	338	parallel
Strand 3	D	315	321	anti-parallel
Strand 4	D	264	269	anti-parallel
Strand 5	D	275	280	anti-parallel
Strand 6	D	284	285	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	245	first strand
Strand 2	D	333	338	parallel
Strand 3	D	315	321	anti-parallel
Strand 4	D	328	329	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	349	first strand
Strand 2	D	360	370	anti-parallel
Strand 3	D	404	413	anti-parallel
Strand 4	D	390	394	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUL