Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PUM entry

There are 4 chains in PDB entry 8PUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 39SER 241
A
 GLY 243PRO 400
B
 HIS 39SER 241
B
 GLY 243PRO 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8PUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed 310
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
96 109Right-handed alpha
Helix 5
AA5
A
122 127Right-handed alpha
Helix 6
AA6
A
130 135Right-handed alpha
Helix 7
AA7
A
152 163Right-handed alpha
Helix 8
AA8
A
190 204Right-handed alpha
Helix 9
AA9
A
214 223Right-handed alpha
Helix 10
AB1
A
226 231Right-handed alpha
Helix 11
AB2
A
255 270Right-handed alpha
Helix 12
AB3
A
276 289Right-handed alpha
Helix 13
AB4
A
289 310Right-handed alpha
Helix 14
AB5
A
336 346Right-handed alpha
Helix 15
AB6
A
348 355Right-handed alpha
Helix 16
AB7
A
380 398Right-handed alpha
Helix 17
AB8
B
45 49Right-handed 310
Helix 18
AB9
B
52 61Right-handed alpha
Helix 19
AC1
B
72 87Right-handed alpha
Helix 20
AC2
B
96 109Right-handed alpha
Helix 21
AC3
B
122 127Right-handed alpha
Helix 22
AC4
B
130 135Right-handed alpha
Helix 23
AC5
B
152 163Right-handed alpha
Helix 24
AC6
B
190 204Right-handed alpha
Helix 25
AC7
B
214 223Right-handed alpha
Helix 26
AC8
B
226 231Right-handed alpha
Helix 27
AC9
B
255 270Right-handed alpha
Helix 28
AD1
B
276 289Right-handed alpha
Helix 29
AD2
B
289 310Right-handed alpha
Helix 30
AD3
B
336 346Right-handed alpha
Helix 31
AD4
B
348 355Right-handed alpha
Helix 32
AD5
B
380 398Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8PUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
360 362parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
207 211parallel
Strand 5
A
171 178parallel
Strand 6
A
114 119parallel
Strand 7
A
139 143parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
364 365anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
360 362parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
250 254anti-parallel
Strand 3
B
235 239anti-parallel
Strand 4
B
207 211parallel
Strand 5
B
171 178parallel
Strand 6
B
114 119parallel
Strand 7
B
139 143parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 317first strand
Strand 2
B
327 332anti-parallel
Strand 3
B
370 374anti-parallel
Strand 4
B
364 365anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il