Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PUO entry

There are 2 chains in PDB entry 8PUO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 446
B
 SER 1ARG 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8PUO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
23 28Right-handed alpha
Helix 3
AA3
A
32 36Right-handed 310
Helix 4
AA4
A
39 46Right-handed alpha
Helix 5
AA5
A
62 77Right-handed alpha
Helix 6
AA6
A
87 92Right-handed alpha
Helix 7
AA7
A
99 116Right-handed alpha
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
136 141Right-handed 310
Helix 10
AB1
A
142 160Right-handed alpha
Helix 11
AB2
A
171 181Right-handed alpha
Helix 12
AB3
A
191 217Right-handed alpha
Helix 13
AB4
A
237 252Right-handed alpha
Helix 14
AB5
A
252 262Right-handed alpha
Helix 15
AB6
A
266 272Right-handed alpha
Helix 16
AB7
A
273 276Right-handed 310
Helix 17
AB8
A
282 288Right-handed alpha
Helix 18
AB9
A
331 346Right-handed alpha
Helix 19
AC1
A
371 391Right-handed alpha
Helix 20
AC2
A
408 415Right-handed 310
Helix 21
AC3
A
432 444Right-handed alpha
Helix 22
AC4
B
8 12Right-handed 310
Helix 23
AC5
B
22 27Right-handed alpha
Helix 24
AC6
B
31 35Right-handed 310
Helix 25
AC7
B
38 45Right-handed alpha
Helix 26
AC8
B
61 76Right-handed alpha
Helix 27
AC9
B
86 91Right-handed alpha
Helix 28
AD1
B
98 115Right-handed alpha
Helix 29
AD2
B
129 134Right-handed alpha
Helix 30
AD3
B
135 140Right-handed 310
Helix 31
AD4
B
141 159Right-handed alpha
Helix 32
AD5
B
160 162Right-handed 310
Helix 33
AD6
B
170 180Right-handed alpha
Helix 34
AD7
B
190 216Right-handed alpha
Helix 35
AD8
B
236 251Right-handed alpha
Helix 36
AD9
B
251 261Right-handed alpha
Helix 37
AE1
B
266 271Right-handed alpha
Helix 38
AE2
B
272 275Right-handed 310
Helix 39
AE3
B
281 287Right-handed alpha
Helix 40
AE4
B
330 345Right-handed alpha
Helix 41
AE5
B
370 390Right-handed alpha
Helix 42
AE6
B
407 414Right-handed 310
Helix 43
AE7
B
431 443Right-handed alpha
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There are 6 sheets in PDB entry 8PUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
81 85parallel
Strand 3
A
119 125parallel
Strand 4
A
165 170parallel
Strand 5
A
221 227parallel
Strand 6
A
293 297parallel
Strand 7
A
351 355parallel
Strand 8
A
395 401parallel
Strand 9
A
17 21parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
301 307parallel
Strand 3
A
311 315anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
429 431anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 20first strand
Strand 2
B
80 84parallel
Strand 3
B
118 124parallel
Strand 4
B
164 169parallel
Strand 5
B
220 226parallel
Strand 6
B
292 296parallel
Strand 7
B
350 354parallel
Strand 8
B
394 400parallel
Strand 9
B
16 20parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 232first strand
Strand 2
B
300 306parallel
Strand 3
B
310 314anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 421first strand
Strand 2
B
428 430anti-parallel
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