Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PUS entry

There is 1 chain in PDB entry 8PUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 39PRO 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8PUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 49Right-handed 310
Helix 2
AA2
A
52 61Right-handed alpha
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
72 87Right-handed alpha
Helix 5
AA5
A
96 109Right-handed alpha
Helix 6
AA6
A
122 127Right-handed alpha
Helix 7
AA7
A
130 135Right-handed alpha
Helix 8
AA8
A
152 163Right-handed alpha
Helix 9
AA9
A
190 204Right-handed alpha
Helix 10
AB1
A
214 223Right-handed alpha
Helix 11
AB2
A
226 231Right-handed alpha
Helix 12
AB3
A
255 270Right-handed alpha
Helix 13
AB4
A
276 289Right-handed alpha
Helix 14
AB5
A
289 310Right-handed alpha
Helix 15
AB6
A
319 323Right-handed 310
Helix 16
AB7
A
336 346Right-handed alpha
Helix 17
AB8
A
348 355Right-handed alpha
Helix 18
AB9
A
380 397Right-handed alpha
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There are 3 sheets in PDB entry 8PUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
360 362parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
207 211parallel
Strand 5
A
171 178parallel
Strand 6
A
114 119parallel
Strand 7
A
139 143parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
370 374anti-parallel
Strand 4
A
364 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il