Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8PUV entry

There are 6 chains in PDB entry 8PUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 492
B	SER 1	LEU 492
C	SER 1	LEU 492
D	THR 1	PRO 160
E	THR 1	PRO 160
F	THR 1	PRO 160

There are 49 helices in PDB entry 8PUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	82	87	Right-handed 310
Helix 3	AA3	A	193	195	Right-handed 310
Helix 4	AA4	A	217	222	Right-handed alpha
Helix 5	AA5	A	237	240	Right-handed 310
Helix 6	AA6	A	260	267	Right-handed alpha
Helix 7	AA7	A	397	416	Right-handed alpha
Helix 8	AA8	A	416	421	Right-handed alpha
Helix 9	AA9	A	425	449	Right-handed alpha
Helix 10	AB1	A	453	470	Right-handed alpha
Helix 11	AB2	A	473	475	Right-handed 310
Helix 12	AB3	A	476	492	Right-handed alpha
Helix 13	AB4	B	1	5	Right-handed 310
Helix 14	AB5	B	100	104	Right-handed 310
Helix 15	AB6	B	133	137	Right-handed 310
Helix 16	AB7	B	193	197	Right-handed 310
Helix 17	AB8	B	216	221	Right-handed alpha
Helix 18	AB9	B	237	242	Right-handed 310
Helix 19	AC1	B	260	268	Right-handed alpha
Helix 20	AC2	B	295	297	Right-handed 310
Helix 21	AC3	B	398	417	Right-handed alpha
Helix 22	AC4	B	425	449	Right-handed alpha
Helix 23	AC5	B	453	470	Right-handed alpha
Helix 24	AC6	B	473	476	Right-handed 310
Helix 25	AC7	B	477	492	Right-handed alpha
Helix 26	AC8	C	1	6	Right-handed 310
Helix 27	AC9	C	82	86	Right-handed 310
Helix 28	AD1	C	100	104	Right-handed 310
Helix 29	AD2	C	193	197	Right-handed 310
Helix 30	AD3	C	216	221	Right-handed alpha
Helix 31	AD4	C	238	240	Right-handed 310
Helix 32	AD5	C	260	267	Right-handed alpha
Helix 33	AD6	C	397	416	Right-handed alpha
Helix 34	AD7	C	417	420	Right-handed 310
Helix 35	AD8	C	425	449	Right-handed alpha
Helix 36	AD9	C	453	470	Right-handed alpha
Helix 37	AE1	C	477	492	Right-handed alpha
Helix 38	AE2	D	15	19	Right-handed 310
Helix 39	AE3	D	113	127	Right-handed alpha
Helix 40	AE4	D	127	141	Right-handed alpha
Helix 41	AE5	D	144	158	Right-handed alpha
Helix 42	AE6	E	15	19	Right-handed 310
Helix 43	AE7	E	112	127	Right-handed alpha
Helix 44	AE8	E	127	142	Right-handed alpha
Helix 45	AE9	E	144	159	Right-handed alpha
Helix 46	AF1	F	15	19	Right-handed 310
Helix 47	AF2	F	112	126	Right-handed alpha
Helix 48	AF3	F	127	142	Right-handed alpha
Helix 49	AF4	F	144	159	Right-handed alpha

There are 35 sheets in PDB entry 8PUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	25	26	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	287	293	anti-parallel
Strand 3	A	180	189	anti-parallel
Strand 4	A	171	177	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	41	51	anti-parallel
Strand 3	A	138	145	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	41	51	anti-parallel
Strand 3	A	280	282	anti-parallel
Strand 4	A	276	277	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	197	202	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	55	60	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	72	first strand
Strand 2	A	109	119	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	254	256	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	320	first strand
Strand 2	A	326	332	anti-parallel
Strand 3	A	372	375	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	363	364	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	379	385	anti-parallel
Strand 3	A	388	394	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	30	35	parallel
Strand 3	B	38	51	anti-parallel
Strand 4	B	138	145	anti-parallel
Strand 5	B	161	165	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	14	first strand
Strand 2	B	30	35	parallel
Strand 3	B	38	51	anti-parallel
Strand 4	B	280	282	anti-parallel
Strand 5	B	276	277	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	26	first strand
Strand 2	B	287	293	anti-parallel
Strand 3	B	181	188	anti-parallel
Strand 4	B	171	175	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	126	131	anti-parallel
Strand 3	B	198	202	anti-parallel
Strand 4	B	213	215	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	126	131	anti-parallel
Strand 3	B	58	60	anti-parallel
Strand 4	B	227	228	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	72	first strand
Strand 2	B	112	119	anti-parallel
Strand 3	B	90	96	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	320	first strand
Strand 2	B	326	332	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	363	364	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	346	first strand
Strand 2	B	379	385	anti-parallel
Strand 3	B	388	394	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	32	35	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	287	293	anti-parallel
Strand 3	C	180	189	anti-parallel
Strand 4	C	296	297	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	42	51	anti-parallel
Strand 4	C	280	282	anti-parallel
Strand 5	C	276	277	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	58	60	anti-parallel
Strand 3	C	227	228	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	98	first strand
Strand 2	C	110	118	anti-parallel
Strand 3	C	66	73	anti-parallel
Strand 4	F	45	48	parallel
Strand 5	F	71	74	anti-parallel
Strand 6	F	10	13	parallel
Strand 7	F	2	4	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	254	256	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	320	first strand
Strand 2	C	326	330	anti-parallel
Strand 3	C	371	375	anti-parallel
Strand 4	C	356	357	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	346	first strand
Strand 2	C	380	385	anti-parallel
Strand 3	C	388	393	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	71	76	parallel
Strand 3	D	44	45	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	71	76	parallel
Strand 3	D	48	49	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	25	first strand
Strand 2	D	28	32	anti-parallel
Strand 3	D	63	65	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	10	13	anti-parallel
Strand 3	E	71	78	parallel
Strand 4	E	48	52	anti-parallel
Strand 5	E	63	66	parallel
Strand 6	E	28	32	anti-parallel
Strand 7	E	23	25	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	10	13	anti-parallel
Strand 3	E	71	78	parallel
Strand 4	E	39	45	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	25	first strand
Strand 2	F	28	32	anti-parallel
Strand 3	F	63	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8PUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8PUV