Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PVB entry

There are 2 chains in PDB entry 8PVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7VAL 447
O
 GLN 1VAL 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8PVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 21Right-handed alpha
Helix 2
AA2
A
70 73Right-handed 310
Helix 3
AA3
A
84 91Right-handed 310
Helix 4
AA4
A
170 173Right-handed 310
Helix 5
AA5
A
177 181Right-handed 310
Helix 6
AA6
A
218 225Right-handed alpha
Helix 7
AA7
A
225 239Right-handed alpha
Helix 8
AA8
A
240 242Right-handed 310
Helix 9
AA9
A
246 270Right-handed alpha
Helix 10
AB1
A
279 306Right-handed alpha
Helix 11
AB2
A
309 447Right-handed alpha
Helix 12
AB3
O
449 452Right-handed 310
Helix 13
AB4
O
495 497Right-handed 310
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There are 6 sheets in PDB entry 8PVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
123 135anti-parallel
Strand 4
A
56 68anti-parallel
Strand 5
A
36 51anti-parallel
Strand 6
A
164 168parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 106first strand
Strand 2
A
123 135anti-parallel
Strand 3
A
56 68anti-parallel
Strand 4
A
36 51anti-parallel
Strand 5
A
175 176parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 98first strand
Strand 2
A
147 156anti-parallel
Strand 3
A
203 216anti-parallel
Strand 4
A
186 200anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
2 7first strand
Strand 2
O
405 413anti-parallel
Strand 3
O
465 470anti-parallel
Strand 4
O
455 460anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
10 11first strand
Strand 2
O
506 509parallel
Strand 3
O
479 486anti-parallel
Strand 4
O
420 426anti-parallel
Strand 5
O
433 439anti-parallel
Strand 6
O
445 447anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
10 11first strand
Strand 2
O
506 509parallel
Strand 3
O
479 486anti-parallel
Strand 4
O
499 502anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il