Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PVD entry

There is 1 chain in PDB entry 8PVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4PRO 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8PVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 20Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
157 159Right-handed 310
Helix 5
AA5
A
160 169Right-handed alpha
Helix 6
AA6
A
178 189Right-handed alpha
Helix 7
AA7
A
192 201Right-handed alpha
Helix 8
AA8
A
202 205Right-handed 310
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
246 257Right-handed alpha
Helix 11
AB2
A
259 271Right-handed alpha
Helix 12
AB3
A
285 292Right-handed alpha
Helix 13
AB4
A
324 329Right-handed alpha
Helix 14
AB5
A
348 366Right-handed alpha
Helix 15
AB6
A
369 377Right-handed 310
Helix 16
AB7
A
415 419Right-handed 310
Helix 17
AB8
A
440 450Right-handed alpha
Helix 18
AB9
A
452 468Right-handed alpha
Helix 19
AC1
A
471 486Right-handed alpha
Helix 20
AC2
A
486 504Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8PVD.

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
229 238anti-parallel
Strand 4
A
276 284anti-parallel
Strand 5
A
311 320anti-parallel
Strand 6
A
78 87anti-parallel
Strand 7
A
106 114anti-parallel
Strand 8
A
131 138anti-parallel
Strand 9
A
141 148anti-parallel
Strand 10
A
214 215anti-parallel
Strand 11
A
229 238anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il