Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PVF entry

There is 1 chain in PDB entry 8PVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 18LEU 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8PVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 38Right-handed alpha
Helix 2
AA2
A
53 63Right-handed alpha
Helix 3
AA3
A
95 99Right-handed 310
Helix 4
AA4
A
100 105Right-handed alpha
Helix 5
AA5
A
118 123Right-handed alpha
Helix 6
AA6
A
124 127Right-handed 310
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
167 184Right-handed alpha
Helix 9
AA9
A
230 239Right-handed alpha
Helix 10
AB1
A
240 243Right-handed 310
Helix 11
AB2
A
272 285Right-handed alpha
Helix 12
AB3
A
300 305Right-handed 310
Helix 13
AB4
A
316 318Right-handed 310
Helix 14
AB5
A
335 352Right-handed alpha
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There are 3 sheets in PDB entry 8PVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
80 83anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
43 48parallel
Strand 5
A
19 23parallel
Strand 6
A
108 111parallel
Strand 7
A
132 135parallel
Strand 8
A
162 164parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
186 195parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
325 332anti-parallel
Strand 6
A
311 314anti-parallel
Strand 7
A
292 295parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
186 195parallel
Strand 4
A
259 267anti-parallel
Strand 5
A
325 332anti-parallel
Strand 6
A
319 322anti-parallel
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