Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PVI entry

There is 1 chain in PDB entry 8PVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2PHE 679
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8PVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 51Right-handed alpha
Helix 2
AA2
A
51 59Right-handed alpha
Helix 3
AA3
A
60 78Right-handed alpha
Helix 4
AA4
A
78 88Right-handed alpha
Helix 5
AA5
A
92 118Right-handed alpha
Helix 6
AA6
A
161 174Right-handed alpha
Helix 7
AA7
A
183 185Right-handed 310
Helix 8
AA8
A
186 201Right-handed alpha
Helix 9
AA9
A
218 222Right-handed 310
Helix 10
AB1
A
233 242Right-handed alpha
Helix 11
AB2
A
243 249Right-handed alpha
Helix 12
AB3
A
273 289Right-handed alpha
Helix 13
AB4
A
290 293Right-handed 310
Helix 14
AB5
A
307 321Right-handed alpha
Helix 15
AB6
A
339 356Right-handed alpha
Helix 16
AB7
A
388 393Right-handed 310
Helix 17
AB8
A
409 418Right-handed alpha
Helix 18
AB9
A
431 443Right-handed alpha
Helix 19
AC1
A
453 458Right-handed alpha
Helix 20
AC2
A
475 479Right-handed 310
Helix 21
AC3
A
486 492Right-handed alpha
Helix 22
AC4
A
502 511Right-handed alpha
Helix 23
AC5
A
525 529Right-handed 310
Helix 24
AC6
A
548 560Right-handed alpha
Helix 25
AC7
A
563 568Right-handed alpha
Helix 26
AC8
A
568 574Right-handed alpha
Helix 27
AC9
A
583 596Right-handed alpha
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There are 9 sheets in PDB entry 8PVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
11 13anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
30 34anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
130 131anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
139 146anti-parallel
Strand 3
A
494 501anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
178 181parallel
Strand 3
A
151 154parallel
Strand 4
A
227 231parallel
Strand 5
A
253 256parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 362first strand
Strand 2
A
378 381anti-parallel
Strand 3
A
400 406parallel
Strand 4
A
298 304parallel
Strand 5
A
261 265parallel
Strand 6
A
422 428parallel
Strand 7
A
446 452parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
482 483anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
520 521first strand
Strand 2
A
538 541parallel
Strand 3
A
623 635anti-parallel
Strand 4
A
646 656anti-parallel
Strand 5
A
662 673anti-parallel
Strand 6
A
603 609anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
623 635anti-parallel
Strand 3
A
646 656anti-parallel
Strand 4
A
662 673anti-parallel
Strand 5
A
613 614anti-parallel
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