Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PVP entry

There are 2 chains in PDB entry 8PVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 331
B
 PRO 4GLN 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8PVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed alpha
Helix 2
AA2
A
26 29Right-handed 310
Helix 3
AA3
A
74 89Right-handed alpha
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
129 150Right-handed alpha
Helix 6
AA6
A
158 160Right-handed 310
Helix 7
AA7
A
166 169Right-handed 310
Helix 8
AA8
A
175 179Right-handed 310
Helix 9
AA9
A
194 198Right-handed 310
Helix 10
AB1
A
199 204Right-handed alpha
Helix 11
AB2
A
211 228Right-handed alpha
Helix 12
AB3
A
237 250Right-handed alpha
Helix 13
AB4
A
250 262Right-handed alpha
Helix 14
AB5
A
266 273Right-handed alpha
Helix 15
AB6
A
280 285Right-handed 310
Helix 16
AB7
A
289 293Right-handed 310
Helix 17
AB8
A
294 305Right-handed alpha
Helix 18
AB9
A
308 312Right-handed 310
Helix 19
AC1
A
314 320Right-handed alpha
Helix 20
AC2
A
321 323Right-handed 310
Helix 21
AC3
A
324 331Right-handed alpha
Helix 22
AC4
B
20 25Right-handed alpha
Helix 23
AC5
B
26 29Right-handed 310
Helix 24
AC6
B
74 89Right-handed alpha
Helix 25
AC7
B
129 150Right-handed alpha
Helix 26
AC8
B
158 160Right-handed 310
Helix 27
AC9
B
166 169Right-handed 310
Helix 28
AD1
B
175 179Right-handed 310
Helix 29
AD2
B
194 198Right-handed 310
Helix 30
AD3
B
199 204Right-handed alpha
Helix 31
AD4
B
211 228Right-handed alpha
Helix 32
AD5
B
237 250Right-handed alpha
Helix 33
AD6
B
250 262Right-handed alpha
Helix 34
AD7
B
267 274Right-handed alpha
Helix 35
AD8
B
280 285Right-handed 310
Helix 36
AD9
B
289 293Right-handed 310
Helix 37
AE1
B
294 305Right-handed alpha
Helix 38
AE2
B
308 312Right-handed 310
Helix 39
AE3
B
314 320Right-handed alpha
Helix 40
AE4
B
321 323Right-handed 310
Helix 41
AE5
B
324 331Right-handed alpha
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There are 6 sheets in PDB entry 8PVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
A
97 102parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
63 70anti-parallel
Strand 5
A
51 58anti-parallel
Strand 6
A
39 47anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
180 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 165first strand
Strand 2
A
170 173anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
97 102parallel
Strand 3
B
109 114anti-parallel
Strand 4
B
63 70anti-parallel
Strand 5
B
51 58anti-parallel
Strand 6
B
39 47anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 153first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
170 173anti-parallel
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