Analysis of interatomic Contacts of Structural Units in PDB entry:
8PVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8PVU entry

There are 5 chains in PDB entry 8PVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ARG 24PRO 356
A
 THR 29PHE 362
B
 THR 29PHE 362
C
 THR 29MET 359
D
 SER 28PHE 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8PVU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
61 78Right-handed alpha
Helix 2
AA2
E
112 119Right-handed alpha
Helix 3
AA3
E
122 143Right-handed alpha
Helix 4
AA4
E
151 153Right-handed 310
Helix 5
AA5
E
195 200Right-handed alpha
Helix 6
AA6
E
207 223Right-handed alpha
Helix 7
AA7
E
232 245Right-handed alpha
Helix 8
AA8
E
257 266Right-handed alpha
Helix 9
AA9
E
274 279Right-handed alpha
Helix 10
AB1
E
283 294Right-handed alpha
Helix 11
AB2
E
303 309Right-handed alpha
Helix 12
AB3
E
340 352Right-handed alpha
Helix 13
AB4
A
41 46Right-handed alpha
Helix 14
AB5
A
47 52Right-handed 310
Helix 15
AB6
A
54 74Right-handed alpha
Helix 16
AB7
A
84 89Right-handed alpha
Helix 17
AB8
A
104 109Right-handed alpha
Helix 18
AB9
A
112 122Right-handed alpha
Helix 19
AC1
A
131 142Right-handed alpha
Helix 20
AC2
A
154 162Right-handed alpha
Helix 21
AC3
A
175 197Right-handed alpha
Helix 22
AC4
A
202 215Right-handed alpha
Helix 23
AC5
A
219 227Right-handed alpha
Helix 24
AC6
A
239 250Right-handed alpha
Helix 25
AC7
A
259 272Right-handed alpha
Helix 26
AC8
A
284 296Right-handed alpha
Helix 27
AC9
A
320 328Right-handed alpha
Helix 28
AD1
A
342 345Right-handed 310
Helix 29
AD2
A
346 354Right-handed alpha
Helix 30
AD3
A
358 362Right-handed 310
Helix 31
AD4
B
35 39Right-handed 310
Helix 32
AD5
B
41 49Right-handed alpha
Helix 33
AD6
B
50 53Right-handed 310
Helix 34
AD7
B
54 74Right-handed alpha
Helix 35
AD8
B
104 110Right-handed alpha
Helix 36
AD9
B
112 122Right-handed alpha
Helix 37
AE1
B
132 141Right-handed alpha
Helix 38
AE2
B
155 162Right-handed alpha
Helix 39
AE3
B
173 196Right-handed alpha
Helix 40
AE4
B
202 215Right-handed alpha
Helix 41
AE5
B
219 227Right-handed alpha
Helix 42
AE6
B
238 249Right-handed alpha
Helix 43
AE7
B
261 272Right-handed alpha
Helix 44
AE8
B
284 294Right-handed alpha
Helix 45
AE9
B
295 298Right-handed 310
Helix 46
AF1
B
321 328Right-handed alpha
Helix 47
AF2
B
342 353Right-handed alpha
Helix 48
AF3
C
35 39Right-handed 310
Helix 49
AF4
C
41 49Right-handed alpha
Helix 50
AF5
C
53 55Right-handed 310
Helix 51
AF6
C
56 74Right-handed alpha
Helix 52
AF7
C
104 109Right-handed alpha
Helix 53
AF8
C
112 122Right-handed alpha
Helix 54
AF9
C
131 142Right-handed alpha
Helix 55
AG1
C
154 162Right-handed alpha
Helix 56
AG2
C
174 197Right-handed alpha
Helix 57
AG3
C
202 215Right-handed alpha
Helix 58
AG4
C
221 227Right-handed alpha
Helix 59
AG5
C
239 248Right-handed alpha
Helix 60
AG6
C
259 272Right-handed alpha
Helix 61
AG7
C
284 296Right-handed alpha
Helix 62
AG8
C
323 328Right-handed 310
Helix 63
AG9
C
342 354Right-handed alpha
Helix 64
AH1
D
35 39Right-handed 310
Helix 65
AH2
D
41 49Right-handed alpha
Helix 66
AH3
D
50 52Right-handed 310
Helix 67
AH4
D
53 55Right-handed 310
Helix 68
AH5
D
56 75Right-handed alpha
Helix 69
AH6
D
104 110Right-handed alpha
Helix 70
AH7
D
111 122Right-handed alpha
Helix 71
AH8
D
132 142Right-handed alpha
Helix 72
AH9
D
174 198Right-handed alpha
Helix 73
AI1
D
202 215Right-handed alpha
Helix 74
AI2
D
219 226Right-handed alpha
Helix 75
AI3
D
238 252Right-handed alpha
Helix 76
AI4
D
259 272Right-handed alpha
Helix 77
AI5
D
284 294Right-handed alpha
Helix 78
AI6
D
320 327Right-handed alpha
Helix 79
AI7
D
346 354Right-handed alpha
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There are 10 sheets in PDB entry 8PVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
25 26first strand
Strand 2
E
39 44anti-parallel
Strand 3
E
49 54anti-parallel
Strand 4
E
103 105anti-parallel
Strand 5
E
88 89anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
110 111first strand
Strand 2
E
155 157anti-parallel
Strand 3
E
163 165anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 146first strand
Strand 2
E
172 173anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
127 129parallel
Strand 3
A
98 102parallel
Strand 4
A
276 280parallel
Strand 5
A
302 306parallel
Strand 6
A
337 339parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
169 172anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
127 129parallel
Strand 3
B
98 102parallel
Strand 4
B
276 281parallel
Strand 5
B
302 307parallel
Strand 6
B
337 340parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
169 172anti-parallel
Strand 3
B
163 166anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
231 232first strand
Strand 2
C
127 129parallel
Strand 3
C
98 103parallel
Strand 4
C
276 281parallel
Strand 5
C
302 307parallel
Strand 6
C
337 340parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 166first strand
Strand 2
C
169 172anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
231 232first strand
Strand 2
D
127 129parallel
Strand 3
D
97 102parallel
Strand 4
D
275 281parallel
Strand 5
D
302 306parallel
Strand 6
D
337 339parallel
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